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    CPSF6 cleavage and polyadenylation specific factor 6 [ Bos taurus (domestic cattle) ]

    Gene ID: 768231, updated on 4-Oct-2024

    Summary

    Official Symbol
    CPSF6provided by VGNC
    Official Full Name
    cleavage and polyadenylation specific factor 6provided by VGNC
    Primary source
    VGNC:VGNC:27674
    See related
    BGD:BT30461; Ensembl:ENSBTAG00000007323
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    NEW
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    Genomic context

    See CPSF6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (44518464..44588303, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene lysozyme Neighboring gene small ribosomal subunit protein uS10-like Neighboring gene small nucleolar RNA SNORA44

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    General protein information

    Preferred Names
    cleavage and polyadenylation specificity factor subunit 6
    Names
    cleavage and polyadenylation specific factor 6, 68 kD subunit
    cleavage and polyadenylation specific factor 6, 68kDa

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078106.2NP_001071574.1  cleavage and polyadenylation specificity factor subunit 6

      See identical proteins and their annotated locations for NP_001071574.1

      Status: PROVISIONAL

      Source sequence(s)
      BC120212
      UniProtKB/Swiss-Prot
      Q0P5D2
      Related
      ENSBTAP00000070710.2, ENSBTAT00000071826.2
      Conserved Domains (1) summary
      cd12643
      Location:82158
      RRM_CFIm68; RNA recognition motif of pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      44518464..44588303 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024992273.2XP_024848041.1  cleavage and polyadenylation specificity factor subunit 6 isoform X4

      Conserved Domains (1) summary
      cd12643
      Location:82158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins
    2. XM_005206467.5XP_005206524.1  cleavage and polyadenylation specificity factor subunit 6 isoform X3

      See identical proteins and their annotated locations for XP_005206524.1

      Conserved Domains (1) summary
      cd12643
      Location:82158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins
    3. XM_005206466.5XP_005206523.1  cleavage and polyadenylation specificity factor subunit 6 isoform X2

      See identical proteins and their annotated locations for XP_005206523.1

      Related
      ENSBTAP00000047307.4, ENSBTAT00000050636.4
      Conserved Domains (2) summary
      COG0724
      Location:9152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins
    4. XM_005206464.5XP_005206521.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

      See identical proteins and their annotated locations for XP_005206521.1

      Conserved Domains (2) summary
      COG0724
      Location:9152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins
    5. XM_005206465.5XP_005206522.1  cleavage and polyadenylation specificity factor subunit 6 isoform X1

      See identical proteins and their annotated locations for XP_005206522.1

      Conserved Domains (2) summary
      COG0724
      Location:9152
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12643
      Location:82158
      RRM_CFIm68; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and similar proteins

    RNA

    1. XR_009494430.1 RNA Sequence