jmjd4 jumonji domain containing 4 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: jmjd4provided by ZNC
Official Full Name: jumonji domain containing 4provided by ZNC
Primary source: ZFIN:ZDB-GENE-060929-636
See related: Ensembl:ENSDARG00000058995 AllianceGenome:ZFIN:ZDB-GENE-060929-636
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:153974; CH1073-162B20.2
Summary: Predicted to enable histone H3-methyl-arginine-3 demethylase activity and sequence-specific DNA binding activity. Predicted to be involved in cellular protein modification process and regulation of gene expression. Predicted to be active in cytoplasm and nucleus. Orthologous to human JMJD4 (jumonji domain containing 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (3403264..3414068)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (3572085..3582889)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables 2-oxoglutarate-dependent dioxygenase activity	IBA Inferred from Biological aspect of Ancestor more info
enables 2-oxoglutarate-dependent dioxygenase activity	IEA Inferred from Electronic Annotation more info
enables 2-oxoglutarate-dependent dioxygenase activity	ISS Inferred from Sequence or Structural Similarity more info
enables dioxygenase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables oxidoreductase activity	IEA Inferred from Electronic Annotation more info
enables peptidyl-lysine 4-dioxygenase activity	IEA Inferred from Electronic Annotation more info
enables sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in positive regulation of translational termination	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of translational termination	ISS Inferred from Sequence or Structural Similarity more info
involved_in protein hydroxylation	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: 2-oxoglutarate and iron-dependent oxygenase JMJD4

Names: jmjC domain-containing protein 4; jumonji domain-containing protein 4; lysyl-hydroxylase JMJD4

NP_001070096.1

EC 1.14.11.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.