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    1700040F15Rik RIKEN cDNA 1700040F15 gene [ Mus musculus (house mouse) ]

    Gene ID: 73329, updated on 17-Aug-2024

    Summary

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    Official Symbol
    1700040F15Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700040F15 geneprovided by MGI
    Primary source
    MGI:MGI:1920579
    See related
    Ensembl:ENSMUSG00000100535 AllianceGenome:MGI:1920579
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm21563
    Summary
    Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See 1700040F15Rik in Genome Data Viewer
    Location:
    Y; Y C3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) Y NC_000087.8 (71704736..71729300)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) Y NC_000087.7 (71693467..71718031)

    Chromosome Y - NC_000087.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 20866 Neighboring gene predicted gene, 20868 Neighboring gene multifunctional methyltransferase subunit TRM112-like protein pseudogene Neighboring gene predicted gene, 20842

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Y chromosomal noncoding RNAs regulate autosomal gene expression via piRNAs in mouse testis. Reddy HM, et al. BMC Biol, 2021 Sep 9. PMID 34503492, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in meiotic cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in spermatid development IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in synaptonemal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    X-linked lymphocyte-regulated protein PM1; uncharacterized protein LOC73329

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000087.8 Reference GRCm39 C57BL/6J

      Range
      71704736..71729300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017318757.1 → XP_017174246.1  X-linked lymphocyte-regulated protein PM1

      UniProtKB/TrEMBL
      A0A087WRK1, A0A087WS79
      Related
      ENSMUSP00000139722.2, ENSMUST00000189315.2
      Conserved Domains (1) summary
      pfam04803
      Location:112 → 215
      Cor1; Cor1/Xlr/Xmr conserved region
    Nucleotide Protein Strain
    Heading Accession and Version

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