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    TFDP1 transcription factor Dp-1 [ Homo sapiens (human) ]

    Gene ID: 7027, updated on 2-Nov-2024

    Summary

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    Official Symbol
    TFDP1provided by HGNC
    Official Full Name
    transcription factor Dp-1provided by HGNC
    Primary source
    HGNC:HGNC:11749
    See related
    Ensembl:ENSG00000198176 MIM:189902; AllianceGenome:HGNC:11749
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    DP1; DILC; Dp-1; DRTF1
    Summary
    This gene encodes a member of a family of transcription factors that heterodimerize with E2F proteins to enhance their DNA-binding activity and promote transcription from E2F target genes. The encoded protein functions as part of this complex to control the transcriptional activity of numerous genes involved in cell cycle progression from G1 to S phase. Alternative splicing results in multiple transcript variants. Pseudogenes of this gene are found on chromosomes 1, 15, and X.[provided by RefSeq, Jan 2009]
    Expression
    Ubiquitous expression in bone marrow (RPKM 54.1), lymph node (RPKM 31.4) and 24 other tissues See more
    Orthologs
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    Genomic context

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    See TFDP1 in Genome Data Viewer
    Location:
    13q34
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (113584688..113641473)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (112843768..112900540)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (114239003..114295788)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene defective in cullin neddylation 1 domain containing 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8039 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5548 Neighboring gene RNA, U1 small nuclear 16, pseudogene Neighboring gene transmembrane and coiled-coil domains 3 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:114192765-114192953 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:114195260-114196459 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114200259-114201002 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114206049-114206550 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114236917-114237890 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114237891-114238862 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5549 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5550 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114240840-114241440 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114251630-114252130 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114268207-114268770 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114267642-114268206 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114269335-114269898 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114269899-114270462 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114271027-114271590 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:114271591-114272153 Neighboring gene uncharacterized LOC124903219 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:114279174-114280373 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114305936-114306560 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114306561-114307185 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114311832-114312332 Neighboring gene ATPase H+/K+ transporting subunit beta Neighboring gene G protein-coupled receptor kinase 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:114426222-114426826 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114426827-114427432 Neighboring gene basic salivary proline-rich protein 4-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:114446225-114446726 Neighboring gene long intergenic non-protein coding RNA 552

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Expression of the TFDP1 gene in the endometrium of women with deep infiltrating endometriosis. Jibrim RLM, et al. Gynecol Endocrinol, 2019 Jun. PMID 30638096
    2. DP-1: a cell cycle-regulated and phosphorylated component of transcription factor DRTF1/E2F which is functionally important for recognition by pRb and the adenovirus E4 orf 6/7 protein. Bandara LR, et al. EMBO J, 1994 Jul 1. PMID 8039504, Free PMC Article
    3. Long non‑coding RNA DILC is involved in sepsis by modulating the signaling pathway of the interleukin‑6/signal transducer and activator of transcription 3/Toll‑like receptor 4 axis. Huang W, et al. Mol Med Rep, 2018 Dec. PMID 30365067
    4. Dysregulation of TFDP1 and of the cell cycle pathway in high-grade glioblastoma multiforme: a bioinformatic analysis. Lu X, et al. Genet Mol Res, 2016 Jun 10. PMID 27323154
    5. Next-generation sequencing of colorectal cancers in chinese: identification of a recurrent frame-shift and gain-of-function Indel mutation in the TFDP1 gene. Chen C, et al. OMICS, 2014 Oct. PMID 25133581, Free PMC Article

    See all (127) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ZNF146 regulates cell cycle progression via TFDP1 and DEPDC1B in ovarian cancer cells.
      Title: ZNF146 regulates cell cycle progression via TFDP1 and DEPDC1B in ovarian cancer cells.
    2. Transcription factor Dp-1 knockdown downregulates thymidine kinase 1 expression to protect against proliferation and epithelial-mesenchymal transition in cervical cancer.
      Title: Transcription factor Dp-1 knockdown downregulates thymidine kinase 1 expression to protect against proliferation and epithelial-mesenchymal transition in cervical cancer.
    3. miR-4711-5p regulates cancer stemness and cell cycle progression via KLF5, MDM2 and TFDP1 in colon cancer cells.
      Title: miR-4711-5p regulates cancer stemness and cell cycle progression via KLF5, MDM2 and TFDP1 in colon cancer cells.
    4. It uncovered E2F1 and TFDP1 as transport substrates of KPNA2 being retained in the cytoplasm upon KPNA2 ablation, thereby resulting in reduced STMN1 expression.
      Title: Karyopherin α2-dependent import of E2F1 and TFDP1 maintains protumorigenic stathmin expression in liver cancer.
    5. We observed a downregulation of TFDP1 in the endometrium cells of women with deep infiltrating endometriosis when compared to the controls
      Title: Expression of the TFDP1 gene in the endometrium of women with deep infiltrating endometriosis.
    6. DILC may mediate the crosstalk between the cascades of IL6/STAT3 and TNFalpha signaling, indicating that DILC may act as a prognostic biomarker of sepsis, and may serve as a potential therapeutic target for the treatment of sepsis.
      Title: Long non‑coding RNA DILC is involved in sepsis by modulating the signaling pathway of the interleukin‑6/signal transducer and activator of transcription 3/Toll‑like receptor 4 axis.
    7. COMMD9 participates in TFDP1/E2F1 activation and plays a critical role in non-small cell lung cancer.
      Title: COMMD9 promotes TFDP1/E2F1 transcriptional activity via interaction with TFDP1 in non-small cell lung cancer.
    8. Here, the authors show that an acidic region of DP1, whose function has remained elusive, binds to the plekstrin homology (PH) domain of the p62 subunit of TFIIH that contributes to transcriptional activation.
      Title: The Interaction Mode of the Acidic Region of the Cell Cycle Transcription Factor DP1 with TFIIH.
    9. role for E2F1 and TFDP1 in the transcriptional regulation of PITX1 in articular chondrocytes
      Title: E2F1 and TFDP1 Regulate PITX1 Expression in Normal and Osteoarthritic Articular Chondrocytes.
    10. According to our study results, the gene TFDP1 and the cell cycle pathway are strongly associated with high-grade glioblastoma multiforme (GBM); this result may provide new insights into the pathogenesis of GBM.
      Title: Dysregulation of TFDP1 and of the cell cycle pathway in high-grade glioblastoma multiforme: a bioinformatic analysis.
    Submit: New GeneRIF Correction See all GeneRIFs (24)

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    contributes_to DNA-binding transcription activator activity, RNA polymerase II-specific IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific ISA
    Inferred from Sequence Alignment
    more info
    		  
    enables DNA-binding transcription factor binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    contributes_to RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    contributes_to RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein domain specific binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anoikis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in epidermis development IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in negative regulation of fat cell proliferation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in positive regulation of DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of G1/S transition of mitotic cell cycle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of DNA biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of RNA polymerase II transcription regulator complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    part_of RNA polymerase II transcription regulator complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    part_of Rb-E2F complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    part_of Rb-E2F complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in chromatin ISA
    Inferred from Sequence Alignment
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		  
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		  
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor Dp-1
    Names
    DRTF1-polypeptide 1
    E2F dimerization partner 1
    E2F-related transcription factor
    down-regulated in liver cancer stem cells

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_029909.1 RefSeqGene

      Range
      5066..61786
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_007111.5 → NP_009042.1  transcription factor Dp-1

      See identical proteins and their annotated locations for NP_009042.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL442125, BC011685
      Consensus CDS
      CCDS9538.1
      UniProtKB/Swiss-Prot
      B4DLQ9, Q14186, Q5JSB4, Q8IZL5
      Related
      ENSP00000364519.4, ENST00000375370.10
      Conserved Domains (3) summary
      cd14458
      Location:198 → 244
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:113 → 193
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:200 → 338
      DP; Transcription factor DP

    RNA

    1. NR_026580.1 RNA Sequence

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an internal alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AK297114, AL442125, CD623680

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      113584688..113641473
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017020717.2 → XP_016876206.1  transcription factor Dp-1 isoform X1

    2. XM_005268327.2 → XP_005268384.1  transcription factor Dp-1 isoform X3

      See identical proteins and their annotated locations for XP_005268384.1

      UniProtKB/Swiss-Prot
      B4DLQ9, Q14186, Q5JSB4, Q8IZL5
      Conserved Domains (3) summary
      cd14458
      Location:198 → 244
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:113 → 193
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:200 → 338
      DP; Transcription factor DP

    3. XM_017020718.2 → XP_016876207.1  transcription factor Dp-1 isoform X4

      Conserved Domains (3) summary
      cd14458
      Location:198 → 244
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:113 → 193
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:200 → 338
      DP; Transcription factor DP

    4. XM_017020719.3 → XP_016876208.1  transcription factor Dp-1 isoform X6

      Conserved Domains (3) summary
      cd14458
      Location:198 → 244
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:113 → 193
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:200 → 335
      DP; Transcription factor DP

    5. XM_047430562.1 → XP_047286518.1  transcription factor Dp-1 isoform X3

      UniProtKB/Swiss-Prot
      B4DLQ9, Q14186, Q5JSB4, Q8IZL5

    6. XM_047430566.1 → XP_047286522.1  transcription factor Dp-1 isoform X3

      UniProtKB/Swiss-Prot
      B4DLQ9, Q14186, Q5JSB4, Q8IZL5

    7. XM_047430569.1 → XP_047286525.1  transcription factor Dp-1 isoform X4

    8. XM_047430554.1 → XP_047286510.1  transcription factor Dp-1 isoform X1

    9. XM_047430561.1 → XP_047286517.1  transcription factor Dp-1 isoform X2

    10. XM_047430570.1 → XP_047286526.1  transcription factor Dp-1 isoform X4

    11. XM_047430575.1 → XP_047286531.1  transcription factor Dp-1 isoform X6

    12. XM_047430564.1 → XP_047286520.1  transcription factor Dp-1 isoform X3

      UniProtKB/Swiss-Prot
      B4DLQ9, Q14186, Q5JSB4, Q8IZL5

    13. XM_047430568.1 → XP_047286524.1  transcription factor Dp-1 isoform X4

    14. XM_047430558.1 → XP_047286514.1  transcription factor Dp-1 isoform X1

    15. XM_047430573.1 → XP_047286529.1  transcription factor Dp-1 isoform X6

    16. XM_047430560.1 → XP_047286516.1  transcription factor Dp-1 isoform X1

    17. XM_047430574.1 → XP_047286530.1  transcription factor Dp-1 isoform X6

    18. XM_005268328.3 → XP_005268385.1  transcription factor Dp-1 isoform X4

      See identical proteins and their annotated locations for XP_005268385.1

      Conserved Domains (3) summary
      cd14458
      Location:198 → 244
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:113 → 193
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:200 → 338
      DP; Transcription factor DP

    19. XM_047430557.1 → XP_047286513.1  transcription factor Dp-1 isoform X1

    20. XM_047430559.1 → XP_047286515.1  transcription factor Dp-1 isoform X1

    21. XM_047430563.1 → XP_047286519.1  transcription factor Dp-1 isoform X3

      UniProtKB/Swiss-Prot
      B4DLQ9, Q14186, Q5JSB4, Q8IZL5

    22. XM_047430567.1 → XP_047286523.1  transcription factor Dp-1 isoform X4

    23. XM_047430572.1 → XP_047286528.1  transcription factor Dp-1 isoform X6

    24. XM_047430571.1 → XP_047286527.1  transcription factor Dp-1 isoform X5

    25. XM_047430576.1 → XP_047286532.1  transcription factor Dp-1 isoform X7

    26. XM_047430577.1 → XP_047286533.1  transcription factor Dp-1 isoform X8

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      112843768..112900540
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054374884.1 → XP_054230859.1  transcription factor Dp-1 isoform X1

    2. XM_054374890.1 → XP_054230865.1  transcription factor Dp-1 isoform X3

      UniProtKB/Swiss-Prot
      B4DLQ9, Q14186, Q5JSB4, Q8IZL5

    3. XM_054374896.1 → XP_054230871.1  transcription factor Dp-1 isoform X4

    4. XM_054374902.1 → XP_054230877.1  transcription factor Dp-1 isoform X6

    5. XM_054374892.1 → XP_054230867.1  transcription factor Dp-1 isoform X3

      UniProtKB/Swiss-Prot
      B4DLQ9, Q14186, Q5JSB4, Q8IZL5

    6. XM_054374893.1 → XP_054230868.1  transcription factor Dp-1 isoform X3

      UniProtKB/Swiss-Prot
      B4DLQ9, Q14186, Q5JSB4, Q8IZL5

    7. XM_054374882.1 → XP_054230857.1  transcription factor Dp-1 isoform X1

    8. XM_054374888.1 → XP_054230863.1  transcription factor Dp-1 isoform X2

    9. XM_054374899.1 → XP_054230874.1  transcription factor Dp-1 isoform X4

    10. XM_054374905.1 → XP_054230880.1  transcription factor Dp-1 isoform X6

    11. XM_054374898.1 → XP_054230873.1  transcription factor Dp-1 isoform X4

    12. XM_054374891.1 → XP_054230866.1  transcription factor Dp-1 isoform X3

      UniProtKB/Swiss-Prot
      B4DLQ9, Q14186, Q5JSB4, Q8IZL5

    13. XM_054374897.1 → XP_054230872.1  transcription factor Dp-1 isoform X4

    14. XM_054374885.1 → XP_054230860.1  transcription factor Dp-1 isoform X1

    15. XM_054374903.1 → XP_054230878.1  transcription factor Dp-1 isoform X6

    16. XM_054374887.1 → XP_054230862.1  transcription factor Dp-1 isoform X1

    17. XM_054374904.1 → XP_054230879.1  transcription factor Dp-1 isoform X6

    18. XM_054374894.1 → XP_054230869.1  transcription factor Dp-1 isoform X4

    19. XM_054374883.1 → XP_054230858.1  transcription factor Dp-1 isoform X1

    20. XM_054374886.1 → XP_054230861.1  transcription factor Dp-1 isoform X1

    21. XM_054374889.1 → XP_054230864.1  transcription factor Dp-1 isoform X3

      UniProtKB/Swiss-Prot
      B4DLQ9, Q14186, Q5JSB4, Q8IZL5

    22. XM_054374895.1 → XP_054230870.1  transcription factor Dp-1 isoform X4

    23. XM_054374901.1 → XP_054230876.1  transcription factor Dp-1 isoform X6

    24. XM_054374900.1 → XP_054230875.1  transcription factor Dp-1 isoform X5

    25. XM_054374906.1 → XP_054230881.1  transcription factor Dp-1 isoform X7

    26. XM_054374907.1 → XP_054230882.1  transcription factor Dp-1 isoform X8

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q14186.1 GenPept UniProtKB/Swiss-Prot:Q14186

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