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    Rbbp8nl RBBP8 N-terminal like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690416, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Rbbp8nlprovided by RGD
    Official Full Name
    RBBP8 N-terminal likeprovided by RGD
    Primary source
    RGD:1596090
    See related
    EnsemblRapid:ENSRNOG00000057245 AllianceGenome:RGD:1596090
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human RBBP8NL (RBBP8 N-terminal like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 11.6), Lung (RPKM 11.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Rbbp8nl in Genome Data Viewer
    Location:
    3q43
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (187741642..187756598, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (167364048..167378993, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (175646786..175661377, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene Cdk5 and Abl enzyme substrate 2 Neighboring gene ribosomal protein S21 Neighboring gene uncharacterized LOC134486214 Neighboring gene GATA binding protein 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Comparison of tear protein levels in breast cancer patients and healthy controls using a de novo proteomic approach. Böhm D, et al. Oncol Rep, 2012 Aug. PMID 22664934, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    RBBP8 N-terminal-like protein; similar to Protein C20orf151

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431782.1 → NP_001418711.1  similar to Protein C20orf151

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A0A0G2JTF0

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      187741642..187756598 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039106759.2 → XP_038962687.1  RBBP8 N-terminal-like protein

      UniProtKB/TrEMBL
      A0A0G2JTF0, A6KMA6
      Conserved Domains (2) summary
      PRK10263
      Location:297 → 599
      PRK10263; DNA translocase FtsK; Provisional
      pfam10482
      Location:4 → 122
      CtIP_N; tumor-suppressor protein CtIP N-terminal domain

    2. XM_039106758.2 → XP_038962686.1  RBBP8 N-terminal-like protein

      Related
      ENSRNOP00000068684.2, ENSRNOT00000080191.3
      Conserved Domains (2) summary
      PRK10263
      Location:297 → 599
      PRK10263; DNA translocase FtsK; Provisional
      pfam10482
      Location:4 → 122
      CtIP_N; tumor-suppressor protein CtIP N-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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