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    Nxf5 nuclear RNA export factor 5 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 680025, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Nxf5provided by RGD
    Official Full Name
    nuclear RNA export factor 5provided by RGD
    Primary source
    RGD:1596862
    See related
    EnsemblRapid:ENSRNOG00000043306 AllianceGenome:RGD:1596862
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 15.8), Testes (RPKM 10.6) and 9 other tissues See more
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    Genomic context

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    See Nxf5 in Genome Data Viewer
    Location:
    Xq32
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (103467816..103490520)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (98676259..98698739)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (106229474..106253226)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene chromobox 1, pseudogene 1 Neighboring gene thymosin beta 15a Neighboring gene armadillo repeat containing, X-linked 5 Neighboring gene RAB18, member RAS oncogene family, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nuclear RNA export factor 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      103467816..103490520
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063280560.1 → XP_063136630.1  nuclear RNA export factor 2-like

      Related
      ENSRNOP00000108945.1, ENSRNOT00000166989.1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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