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    B3GALT6 beta-1,3-galactosyltransferase 6 [ Canis lupus familiaris (dog) ]

    Gene ID: 664717, updated on 17-Aug-2024

    Summary

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    Official Symbol
    B3GALT6provided by VGNC
    Official Full Name
    beta-1,3-galactosyltransferase 6provided by VGNC
    Primary source
    VGNC:VGNC:53266
    See related
    Ensembl:ENSCAFG00845023048
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See B3GALT6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (56624609..56628479)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (56498687..56502557)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (56897625..56901495)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (56615345..56619215)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (56507624..56511494)

    Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 4 Neighboring gene stromal cell derived factor 4 Neighboring gene uncharacterized LOC119871889 Neighboring gene C1q and TNF related 12 Neighboring gene ubiquitin conjugating enzyme E2 J2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycosaminoglycan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-1,3-galactosyltransferase 6
    Names
    UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6
    XP_038332359.1
    XP_038377511.1
    XP_038393506.1
    XP_038457664.1
    XP_038522233.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001048137.1 → NP_001041602.1  beta-1,3-galactosyltransferase 6

      See identical proteins and their annotated locations for NP_001041602.1

      Status: PROVISIONAL

      Source sequence(s)
      AM235753
      UniProtKB/TrEMBL
      A0A8C0RWR3, Q257A0
      Conserved Domains (1) summary
      cl21608
      Location:70 → 260
      Galactosyl_T; Galactosyltransferase

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051809.1 Reference ROS_Cfam_1.0

      Range
      56624609..56628479
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038666305.1 → XP_038522233.1  beta-1,3-galactosyltransferase 6

      UniProtKB/TrEMBL
      A0A8C0KEQ5, A0A8C0LU96, A0A8C0RWR3, A0A8I3PLU7
      Related
      ENSCAFP00845031836.1, ENSCAFT00845040673.1
      Conserved Domains (1) summary
      cl21608
      Location:69 → 260
      Galactosyl_T; Galactosyltransferase

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049265.1 Alternate UMICH_Zoey_3.1

      Range
      56615345..56619215
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038476431.1 → XP_038332359.1  beta-1,3-galactosyltransferase 6

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

      Range
      56507624..56511494
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038601736.1 → XP_038457664.1  beta-1,3-galactosyltransferase 6

      Conserved Domains (1) summary
      cl21608
      Location:69 → 260
      Galactosyl_T; Galactosyltransferase

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

      Range
      56897625..56901495
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038537578.1 → XP_038393506.1  beta-1,3-galactosyltransferase 6

      UniProtKB/TrEMBL
      A0A8C0KEQ5, A0A8C0LU96, A0A8C0RWR3, A0A8I3PLU7
      Conserved Domains (1) summary
      cl21608
      Location:69 → 260
      Galactosyl_T; Galactosyltransferase

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      56498687..56502557
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038521583.1 → XP_038377511.1  beta-1,3-galactosyltransferase 6

      UniProtKB/TrEMBL
      A0A8C0KEQ5, A0A8C0LU96, A0A8C0RWR3, A0A8I3PLU7
      Conserved Domains (1) summary
      cl21608
      Location:69 → 260
      Galactosyl_T; Galactosyltransferase
    Nucleotide Protein
    Heading Accession and Version

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