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    RD3L RD3 like [ Homo sapiens (human) ]

    Gene ID: 647286, updated on 17-Sep-2024

    Summary

    Official Symbol
    RD3Lprovided by HGNC
    Official Full Name
    RD3 likeprovided by HGNC
    Primary source
    HGNC:HGNC:40912
    See related
    Ensembl:ENSG00000227729 AllianceGenome:HGNC:40912
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TDRD9AS1; TDRD9-AS1
    Expression
    Restricted expression toward heart (RPKM 10.1) See more
    Orthologs
    NEW
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    Genomic context

    See RD3L in Genome Data Viewer
    Location:
    14q32.33
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (103940426..103942529, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (98177745..98179848, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (104406763..104408866, complement)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6180 Neighboring gene uncharacterized LOC105370689 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6181 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9113 Neighboring gene Sharpr-MPRA regulatory region 8463 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:104347808-104348489 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6182 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104377123-104377623 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:104387521-104388196 Neighboring gene ATP synthase membrane subunit j Neighboring gene tudor domain containing 9 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:104483234-104484433 Neighboring gene RNA, 7SL, cytoplasmic 634, pseudogene Neighboring gene uncharacterized LOC124903408

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    protein RD3-like
    Names
    TDRD9 antisense 1
    TDRD9 antisense RNA 1 (non-protein coding)
    retinal degeneration 3 like
    retinal degeneration protein 3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257268.2NP_001244197.1  protein RD3-like

      See identical proteins and their annotated locations for NP_001244197.1

      Status: VALIDATED

      Source sequence(s)
      AL136001, BQ184214, BX117646
      Consensus CDS
      CCDS58338.1
      UniProtKB/Swiss-Prot
      P0DJH9
      Related
      ENSP00000455434.1, ENST00000557640.2
      Conserved Domains (1) summary
      pfam14473
      Location:16132
      RD3; RD3 protein

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      103940426..103942529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      98177745..98179848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)