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    IFT25 intraflagellar transport 25 [ Bos taurus (domestic cattle) ]

    Gene ID: 616194, updated on 4-Oct-2024

    Summary

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    Official Symbol
    IFT25provided by VGNC
    Official Full Name
    intraflagellar transport 25provided by VGNC
    Primary source
    VGNC:VGNC:55237
    See related
    Ensembl:ENSBTAG00000007112
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    HSPB11; C3H1ORF41
    Orthologs
    human mouse all
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    Genomic context

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    See IFT25 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (92262416..92337616)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor class A domain containing 1 Neighboring gene leucine rich repeat containing 42 Neighboring gene iodothyronine deiodinase 1 Neighboring gene Yip1 domain family member 1 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene NDC1 transmembrane nucleoporin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in intraciliary transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of intraciliary transport particle B IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    intraflagellar transport protein 25 homolog
    Names
    heat shock protein family B (small) member 11
    heat shock protein family B (small), member 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076412.1 → NP_001069880.1  intraflagellar transport protein 25 homolog

      See identical proteins and their annotated locations for NP_001069880.1

      Status: PROVISIONAL

      Source sequence(s)
      BC118487
      UniProtKB/TrEMBL
      Q17Q88
      Related
      ENSBTAP00000009357.5, ENSBTAT00000009357.7
      Conserved Domains (1) summary
      pfam00754
      Location:19 → 125
      F5_F8_type_C; F5/8 type C domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      92262416..92337616
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015465597.3 → XP_015321083.1  intraflagellar transport protein 25 homolog isoform X2

      Conserved Domains (1) summary
      pfam00754
      Location:52 → 123
      F5_F8_type_C; F5/8 type C domain

    2. XM_024989714.2 → XP_024845482.1  intraflagellar transport protein 25 homolog isoform X4

      Conserved Domains (1) summary
      pfam00754
      Location:52 → 123
      F5_F8_type_C; F5/8 type C domain

    3. XM_059884870.1 → XP_059740853.1  intraflagellar transport protein 25 homolog isoform X3

      UniProtKB/TrEMBL
      Q17Q88

    4. XM_005204606.5 → XP_005204663.1  intraflagellar transport protein 25 homolog isoform X1

      Conserved Domains (1) summary
      pfam00754
      Location:52 → 158
      F5_F8_type_C; F5/8 type C domain

    5. XM_015465600.3 → XP_015321086.1  intraflagellar transport protein 25 homolog isoform X5

      Conserved Domains (1) summary
      pfam00754
      Location:52 → 123
      F5_F8_type_C; F5/8 type C domain

    6. XM_005204607.5 → XP_005204664.1  intraflagellar transport protein 25 homolog isoform X3

      See identical proteins and their annotated locations for XP_005204664.1

      UniProtKB/TrEMBL
      Q17Q88
      Conserved Domains (1) summary
      pfam00754
      Location:19 → 125
      F5_F8_type_C; F5/8 type C domain
    Nucleotide Protein Strain
    Heading Accession and Version

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