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    RPS21 ribosomal protein S21 [ Bos taurus (domestic cattle) ]

    Gene ID: 615178, updated on 4-Oct-2024

    Summary

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    Official Symbol
    RPS21provided by VGNC
    Official Full Name
    ribosomal protein S21provided by VGNC
    Primary source
    VGNC:VGNC:34134
    See related
    BGD:BT13075
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See RPS21 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (54866479..54867739, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene RBBP8 N-terminal like Neighboring gene Cdk5 and Abl enzyme substrate 2 Neighboring gene uncharacterized LOC112449312 Neighboring gene microRNA mir-2306

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC133562

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS21
    Names
    40S ribosomal protein S21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040581.2 → NP_001035671.1  small ribosomal subunit protein eS21

      See identical proteins and their annotated locations for NP_001035671.1

      Status: PROVISIONAL

      Source sequence(s)
      BC108180
      UniProtKB/Swiss-Prot
      Q32PB8
      Conserved Domains (1) summary
      pfam01249
      Location:1 → 80
      Ribosomal_S21e; Ribosomal protein S21e

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      54866479..54867739 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010811529.2 → XP_010809831.1  small ribosomal subunit protein eS21 isoform X1

      See identical proteins and their annotated locations for XP_010809831.1

      UniProtKB/Swiss-Prot
      Q32PB8
      Conserved Domains (1) summary
      pfam01249
      Location:1 → 80
      Ribosomal_S21e; Ribosomal protein S21e

    2. XM_005214850.3 → XP_005214907.1  small ribosomal subunit protein eS21 isoform X1

      See identical proteins and their annotated locations for XP_005214907.1

      UniProtKB/Swiss-Prot
      Q32PB8
      Conserved Domains (1) summary
      pfam01249
      Location:1 → 80
      Ribosomal_S21e; Ribosomal protein S21e
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q32PB8.1 GenPept UniProtKB/Swiss-Prot:Q32PB8

    Gene LinkOut

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