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    POP4 POP4 homolog, ribonuclease P/MRP subunit [ Bos taurus (domestic cattle) ]

    Gene ID: 614870, updated on 10-Oct-2024

    Summary

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    Official Symbol
    POP4provided by VGNC
    Official Full Name
    POP4 homolog, ribonuclease P/MRP subunitprovided by VGNC
    Primary source
    VGNC:VGNC:33164
    See related
    Ensembl:ENSBTAG00000002223
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See POP4 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (40233528..40242999)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene hydrocephalus-inducing protein homolog Neighboring gene uncharacterized LOC132342831 Neighboring gene HYDIN axonemal central pair apparatus protein Neighboring gene chromosome 18 C19orf12 homolog Neighboring gene pleckstrin homology and FYVE domain containing 1 Neighboring gene microRNA mir-2901

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC137348

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ribonuclease P RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA 5'-leader removal IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ribonuclease MRP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonuclease P complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribonuclease P protein subunit p29
    Names
    POP4 (processing of precursor , S. cerevisiae) homolog
    processing of precursor 4, ribonuclease P/MRP subunit
    NP_001029942.1
    NP_001106753.1
    XP_024834259.1
    XP_059732881.1
    XP_059732882.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034770.1 → NP_001029942.1  ribonuclease P protein subunit p29 isoform 2

      See identical proteins and their annotated locations for NP_001029942.1

      Status: PROVISIONAL

      Description
      Transcript Variant: This variant (2) contains a distinct 5' UTR and lacks an in-frame portion of the 5' coding region, compared to variant 1. The resulting isoform (2) has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      BT021479
      UniProtKB/TrEMBL
      F1N244, Q58DW8
      Related
      ENSBTAP00000086202.1, ENSBTAT00000103330.1
      Conserved Domains (1) summary
      pfam01868
      Location:90 → 172
      UPF0086; Domain of unknown function UPF0086

    2. NM_001113282.2 → NP_001106753.1  ribonuclease P protein subunit p29 isoform 1

      See identical proteins and their annotated locations for NP_001106753.1

      Status: PROVISIONAL

      Source sequence(s)
      BC112695
      UniProtKB/Swiss-Prot
      Q2KIB9
      UniProtKB/TrEMBL
      A0AAF6YJ89
      Conserved Domains (1) summary
      pfam01868
      Location:128 → 210
      UPF0086; Domain of unknown function UPF0086

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      40233528..40242999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059876898.1 → XP_059732881.1  ribonuclease P protein subunit p29 isoform X1

    2. XM_024978491.2 → XP_024834259.1  ribonuclease P protein subunit p29 isoform X2

      UniProtKB/TrEMBL
      F1N244, Q58DW8
      Conserved Domains (1) summary
      pfam01868
      Location:90 → 172
      UPF0086; Domain of unknown function UPF0086

    3. XM_059876899.1 → XP_059732882.1  ribonuclease P protein subunit p29 isoform X2

      UniProtKB/TrEMBL
      F1N244, Q58DW8
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2KIB9.1 GenPept UniProtKB/Swiss-Prot:Q2KIB9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials