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    TAF12 TATA-box binding protein associated factor 12 [ Bos taurus (domestic cattle) ]

    Gene ID: 614227, updated on 10-Oct-2024

    Summary

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    Official Symbol
    TAF12provided by VGNC
    Official Full Name
    TATA-box binding protein associated factor 12provided by VGNC
    Primary source
    VGNC:VGNC:97316
    See related
    BGD:BT13247; Ensembl:ENSBTAG00000026660
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TAF12 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (124810130..124834314)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132343445 Neighboring gene U11 spliceosomal RNA Neighboring gene RAB42, member RAS oncogene family Neighboring gene small nucleolar RNA SNORA16B/SNORA16A family Neighboring gene small nucleolar RNA host gene 12 (non-protein coding)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC127146

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in RNA polymerase II preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SLIK (SAGA-like) complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor TFIID subunit 12
    Names
    TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa
    TAFII-20/TAFII-15
    TAFII20/TAFII15
    transcription initiation factor TFIID 20/15 kDa subunits

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034754.1 → NP_001029926.1  transcription initiation factor TFIID subunit 12

      See identical proteins and their annotated locations for NP_001029926.1

      Status: PROVISIONAL

      Source sequence(s)
      BC102082
      UniProtKB/Swiss-Prot
      Q3T174
      UniProtKB/TrEMBL
      A0AAA9SY73
      Related
      ENSBTAP00000037817.4, ENSBTAT00000037998.6
      Conserved Domains (1) summary
      cd07981
      Location:58 → 126
      TAF12; TATA Binding Protein (TBP) Associated Factor 12

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      124810130..124834314
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059876485.1 → XP_059732468.1  transcription initiation factor TFIID subunit 12 isoform X1

    2. XM_005203235.5 → XP_005203292.1  transcription initiation factor TFIID subunit 12 isoform X2

      See identical proteins and their annotated locations for XP_005203292.1

      UniProtKB/Swiss-Prot
      Q3T174
      UniProtKB/TrEMBL
      A0AAA9SY73
      Conserved Domains (1) summary
      cd07981
      Location:58 → 126
      TAF12; TATA Binding Protein (TBP) Associated Factor 12

    3. XM_005203230.5 → XP_005203287.1  transcription initiation factor TFIID subunit 12 isoform X1

      See identical proteins and their annotated locations for XP_005203287.1

      UniProtKB/TrEMBL
      A0AAF7AGC6
      Conserved Domains (1) summary
      cd07981
      Location:110 → 178
      TAF12; TATA Binding Protein (TBP) Associated Factor 12

    4. XM_024977520.2 → XP_024833288.1  transcription initiation factor TFIID subunit 12 isoform X1

      UniProtKB/TrEMBL
      A0AAF7AGC6
      Conserved Domains (1) summary
      cd07981
      Location:110 → 178
      TAF12; TATA Binding Protein (TBP) Associated Factor 12

    5. XM_005203233.4 → XP_005203290.1  transcription initiation factor TFIID subunit 12 isoform X1

      See identical proteins and their annotated locations for XP_005203290.1

      UniProtKB/TrEMBL
      A0AAF7AGC6
      Related
      ENSBTAP00000068815.2, ENSBTAT00000067990.2
      Conserved Domains (1) summary
      cd07981
      Location:110 → 178
      TAF12; TATA Binding Protein (TBP) Associated Factor 12
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3T174.1 GenPept UniProtKB/Swiss-Prot:Q3T174

    Gene LinkOut

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