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    RAB5C RAB5C, member RAS oncogene family [ Bos taurus (domestic cattle) ]

    Gene ID: 613749, updated on 12-Oct-2024

    Summary

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    Official Symbol
    RAB5Cprovided by VGNC
    Official Full Name
    RAB5C, member RAS oncogene familyprovided by VGNC
    Primary source
    VGNC:VGNC:50253
    See related
    BGD:BT10557; Ensembl:ENSBTAG00000006982
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    RAB5B
    Orthologs
    human mouse all
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    Genomic context

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    See RAB5C in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (42258862..42280731, complement)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene lysine acetyltransferase 2A Neighboring gene heat shock protein family B (small) member 9 Neighboring gene potassium voltage-gated channel subfamily H member 4 Neighboring gene uncharacterized LOC132343075 Neighboring gene hypocretin neuropeptide precursor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC139406

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ras-related protein Rab-5C
    Names
    RAB5B, member RAS oncogene family
    NP_001029915.1
    XP_005220807.1
    XP_005220808.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034743.2 → NP_001029915.1  ras-related protein Rab-5C

      See identical proteins and their annotated locations for NP_001029915.1

      Status: PROVISIONAL

      Source sequence(s)
      BC118226
      UniProtKB/Swiss-Prot
      Q17QR1, Q58DS9
      UniProtKB/TrEMBL
      A0AAF6YWC4
      Conserved Domains (1) summary
      cd01860
      Location:21 → 183
      Rab5_related; Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      42258862..42280731 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005220750.4 → XP_005220807.1  ras-related protein Rab-5C isoform X1

      See identical proteins and their annotated locations for XP_005220807.1

      UniProtKB/Swiss-Prot
      Q17QR1, Q58DS9
      UniProtKB/TrEMBL
      A0AAF6YWC4
      Related
      ENSBTAP00000015581.6, ENSBTAT00000015581.7
      Conserved Domains (1) summary
      cd01860
      Location:21 → 183
      Rab5_related; Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

    2. XM_005220751.5 → XP_005220808.1  ras-related protein Rab-5C isoform X1

      See identical proteins and their annotated locations for XP_005220808.1

      UniProtKB/Swiss-Prot
      Q17QR1, Q58DS9
      UniProtKB/TrEMBL
      A0AAF6YWC4
      Conserved Domains (1) summary
      cd01860
      Location:21 → 183
      Rab5_related; Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q58DS9.1 GenPept UniProtKB/Swiss-Prot:Q58DS9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.