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    bcl2l11 BCL2 like 11 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 613103, updated on 17-Aug-2024

    Summary

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    Official Symbol
    bcl2l11provided by Xenbase
    Official Full Name
    BCL2 like 11provided by Xenbase
    Primary source
    Xenbase:XB-GENE-990117
    See related
    Ensembl:ENSXETG00000042001
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    bam; bim; bod; biml; bimel; bcl-2l11; bim-beta6; bim-beta7; bim-alpha6
    Orthologs
    human mouse all
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    Genomic context

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    See bcl2l11 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (40227343..40270751, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (50387090..50425212, complement)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101730793 Neighboring gene destrin, actin depolymerizing factor Neighboring gene acyl-CoA oxidase like Neighboring gene BUB1 mitotic checkpoint serine/threonine kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC108132

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    bcl-2-like protein 11
    Names
    bcl2-like 11 (apoptosis facilitator)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001032340.1 → NP_001027511.1  bcl-2-like protein 11

      See identical proteins and their annotated locations for NP_001027511.1

      Status: PROVISIONAL

      Source sequence(s)
      BC098324
      UniProtKB/TrEMBL
      A0A803KLJ9, F6UR48, Q4KMV9
      Related
      ENSXETP00000105879.1, ENSXETT00000113022.1
      Conserved Domains (2) summary
      pfam06773
      Location:4 → 44
      Bim_N; Bim protein N-terminus
      pfam08945
      Location:138 → 159
      Bclx_interact; Bcl-x interacting, BH3 domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      40227343..40270751 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012963081.3 → XP_012818535.1  bcl-2-like protein 11 isoform X1

      See identical proteins and their annotated locations for XP_012818535.1

      UniProtKB/TrEMBL
      A0A803KLJ9, F6UR48, Q4KMV9
      Related
      ENSXETP00000107160.1, ENSXETT00000116206.1
      Conserved Domains (2) summary
      pfam06773
      Location:4 → 44
      Bim_N; Bim protein N-terminus
      pfam08945
      Location:138 → 159
      Bclx_interact; Bcl-x interacting, BH3 domain

    2. XM_031901741.1 → XP_031757601.1  bcl-2-like protein 11 isoform X2

      UniProtKB/TrEMBL
      A0A8J1JLW0
      Conserved Domains (1) summary
      pfam06773
      Location:4 → 44
      Bim_N; Bim protein N-terminus

    3. XM_031901742.1 → XP_031757602.1  bcl-2-like protein 11 isoform X3

      UniProtKB/TrEMBL
      A0A8J1JIB2
      Conserved Domains (1) summary
      pfam06773
      Location:4 → 44
      Bim_N; Bim protein N-terminus
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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