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    TUBE1 tubulin epsilon 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 612390, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TUBE1provided by VGNC
    Official Full Name
    tubulin epsilon 1provided by VGNC
    Primary source
    VGNC:VGNC:54383
    See related
    Ensembl:ENSCAFG00845018424
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See TUBE1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (69380998..69396227, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (68317764..68332960, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 12 NC_049233.1 (68905013..68920199, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 12 NC_049272.1 (68740495..68755703, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 12 NC_049753.1 (68578009..68593213, complement)

    Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106559589 Neighboring gene uncharacterized LOC111098402 Neighboring gene cellular communication network factor 6 Neighboring gene family with sequence similarity 229 member B Neighboring gene laminin subunit alpha 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubulin epsilon chain; LOW QUALITY PROTEIN: tubulin epsilon chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051816.1 Reference ROS_Cfam_1.0

      Range
      69380998..69396227 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038684405.1 → XP_038540333.1  tubulin epsilon chain isoform X1

      UniProtKB/TrEMBL
      A0A8C0MG21, A0A8I3P761, A0A8P0S9S2
      Related
      ENSCAFP00845025493.1, ENSCAFT00845032592.1
      Conserved Domains (1) summary
      cd02190
      Location:2 → 457
      epsilon_tubulin; The epsilon-tubulin family

    2. XM_038684406.1 → XP_038540334.1  tubulin epsilon chain isoform X2

      UniProtKB/TrEMBL
      A0A8P0S9S2
      Conserved Domains (1) summary
      cd02190
      Location:2 → 456
      epsilon_tubulin; The epsilon-tubulin family

    3. XM_038684407.1 → XP_038540335.1  tubulin epsilon chain isoform X3

      UniProtKB/TrEMBL
      A0A8P0NSV5
      Conserved Domains (1) summary
      cd02190
      Location:1 → 382
      epsilon_tubulin; The epsilon-tubulin family

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049272.1 Alternate UMICH_Zoey_3.1

      Range
      68740495..68755703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038492664.1 → XP_038348592.1  tubulin epsilon chain isoform X1

      Conserved Domains (1) summary
      cd02190
      Location:2 → 457
      epsilon_tubulin; The epsilon-tubulin family

    2. XM_038492665.1 → XP_038348593.1  tubulin epsilon chain isoform X2

      Conserved Domains (1) summary
      cd02190
      Location:2 → 456
      epsilon_tubulin; The epsilon-tubulin family

    3. XM_038492666.1 → XP_038348594.1  tubulin epsilon chain isoform X3

      Conserved Domains (1) summary
      cd02190
      Location:1 → 382
      epsilon_tubulin; The epsilon-tubulin family

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049753.1 Alternate UNSW_CanFamBas_1.0

      Range
      68578009..68593213 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038618852.1 → XP_038474780.1  tubulin epsilon chain isoform X1

      Conserved Domains (1) summary
      cd02190
      Location:2 → 457
      epsilon_tubulin; The epsilon-tubulin family

    2. XM_038618853.1 → XP_038474781.1  tubulin epsilon chain isoform X2

      Conserved Domains (1) summary
      cd02190
      Location:2 → 456
      epsilon_tubulin; The epsilon-tubulin family

    3. XM_038618854.1 → XP_038474782.1  tubulin epsilon chain isoform X3

      Conserved Domains (1) summary
      cd02190
      Location:1 → 382
      epsilon_tubulin; The epsilon-tubulin family

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049233.1 Alternate UU_Cfam_GSD_1.0

      Range
      68905013..68920199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038554985.1 → XP_038410913.1  LOW QUALITY PROTEIN: tubulin epsilon chain isoform X1

      UniProtKB/TrEMBL
      A0A8P0S9S2

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      68317764..68332960 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_850121.5 → XP_855214.3  tubulin epsilon chain isoform X1

      UniProtKB/TrEMBL
      A0A8C0MG21, A0A8I3P761, A0A8P0S9S2
      Conserved Domains (1) summary
      cd02190
      Location:2 → 457
      epsilon_tubulin; The epsilon-tubulin family

    2. XM_038681013.1 → XP_038536941.1  tubulin epsilon chain isoform X2

      UniProtKB/TrEMBL
      A0A8P0S9S2
      Conserved Domains (1) summary
      cd02190
      Location:2 → 456
      epsilon_tubulin; The epsilon-tubulin family

    3. XM_038681016.1 → XP_038536944.1  tubulin epsilon chain isoform X3

      UniProtKB/TrEMBL
      A0A8P0NSV5
      Conserved Domains (1) summary
      cd02190
      Location:1 → 382
      epsilon_tubulin; The epsilon-tubulin family
    Nucleotide Protein
    Heading Accession and Version

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