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    TBP TATA-box binding protein [ Canis lupus familiaris (dog) ]

    Gene ID: 611193, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TBPprovided by VGNC
    Official Full Name
    TATA-box binding proteinprovided by VGNC
    Primary source
    VGNC:VGNC:47164
    See related
    Ensembl:ENSCAFG00845023066
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See TBP in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (73444412..73464611)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (72221201..72241583)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 12 NC_049233.1 (72930358..72950554)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 12 NC_049272.1 (72717146..72737106)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 12 NC_049753.1 (72539334..72559523)

    Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-2(I) chain-like Neighboring gene proteasome 20S subunit beta 1 Neighboring gene translation initiation factor IF-2-like Neighboring gene programmed cell death 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chromatin interaction of TATA-binding protein is dynamically regulated in human cells. de Graaf P, et al. J Cell Sci, 2010 Aug 1. PMID 20627952
    2. Comparative radiation hybrid map of canine chromosome 1 incorporating SNP and indel polymorphisms. Housley DJ, et al. Genomics, 2004 Aug. PMID 15233990
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Results support a model for a BTAF1-mediated release of TBP-NC2 complexes from chromatin.
      Title: Chromatin interaction of TATA-binding protein is dynamically regulated in human cells.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TATA-box-binding protein
    Names
    TATA binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051816.1 Reference ROS_Cfam_1.0

      Range
      73444412..73464611
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038684467.1 → XP_038540395.1  TATA-box-binding protein

      UniProtKB/TrEMBL
      A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    2. XM_038684466.1 → XP_038540394.1  TATA-box-binding protein

      UniProtKB/TrEMBL
      A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
      Related
      ENSCAFP00845031876.1, ENSCAFT00845040722.1
      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    3. XM_038684469.1 → XP_038540397.1  TATA-box-binding protein

      UniProtKB/TrEMBL
      A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    4. XM_038684468.1 → XP_038540396.1  TATA-box-binding protein

      UniProtKB/TrEMBL
      A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049272.1 Alternate UMICH_Zoey_3.1

      Range
      72717146..72737106
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038492721.1 → XP_038348649.1  TATA-box-binding protein

    2. XM_038492720.1 → XP_038348648.1  TATA-box-binding protein

    3. XM_038492723.1 → XP_038348651.1  TATA-box-binding protein

    4. XM_038492722.1 → XP_038348650.1  TATA-box-binding protein

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049753.1 Alternate UNSW_CanFamBas_1.0

      Range
      72539334..72559523
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038618908.1 → XP_038474836.1  TATA-box-binding protein

      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    2. XM_038618907.1 → XP_038474835.1  TATA-box-binding protein

      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    3. XM_038618910.1 → XP_038474838.1  TATA-box-binding protein

      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    4. XM_038618909.1 → XP_038474837.1  TATA-box-binding protein

      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049233.1 Alternate UU_Cfam_GSD_1.0

      Range
      72930358..72950554
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038555038.1 → XP_038410966.1  TATA-box-binding protein

      UniProtKB/TrEMBL
      A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    2. XM_038555037.1 → XP_038410965.1  TATA-box-binding protein

      UniProtKB/TrEMBL
      A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    3. XM_038555040.1 → XP_038410968.1  TATA-box-binding protein

      UniProtKB/TrEMBL
      A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    4. XM_038555039.1 → XP_038410967.1  TATA-box-binding protein

      UniProtKB/TrEMBL
      A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      72221201..72241583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_849432.6 → XP_854525.1  TATA-box-binding protein

      See identical proteins and their annotated locations for XP_854525.1

      UniProtKB/TrEMBL
      A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    2. XM_005627735.4 → XP_005627792.1  TATA-box-binding protein

      See identical proteins and their annotated locations for XP_005627792.1

      UniProtKB/TrEMBL
      A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    3. XM_005627737.4 → XP_005627794.1  TATA-box-binding protein

      See identical proteins and their annotated locations for XP_005627794.1

      UniProtKB/TrEMBL
      A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional

    4. XM_005627736.4 → XP_005627793.1  TATA-box-binding protein

      See identical proteins and their annotated locations for XP_005627793.1

      UniProtKB/TrEMBL
      A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
      Conserved Domains (1) summary
      PLN00062
      Location:147 → 323
      PLN00062; TATA-box-binding protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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