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    POU4F1 POU class 4 homeobox 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 610785, updated on 5-Mar-2024

    Summary

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    Gene symbol
    POU4F1
    Gene description
    POU class 4 homeobox 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See POU4F1 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 22 NC_051826.1 (32315525..32317867, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 22 NC_006604.4 (31792017..31794362, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 22 NC_049243.1 (32086264..32088616, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 22 NC_049282.1 (31977103..31979449, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 22 NC_049763.1 (32014166..32016510, complement)

    Chromosome 22 - NC_051826.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119865139 Neighboring gene uncharacterized LOC111091662 Neighboring gene uncharacterized LOC111091761 Neighboring gene uncharacterized LOC119865208 Neighboring gene ORC ubiquitin ligase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: POU domain, class 4, transcription factor 1; POU domain, class 4, transcription factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051826.1 Reference ROS_Cfam_1.0

      Range
      32315525..32317867 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038430803.1 → XP_038286731.1  POU domain, class 4, transcription factor 1

      UniProtKB/TrEMBL
      A0A8C0M7A4, A0A8I3Q3P1
      Conserved Domains (2) summary
      smart00352
      Location:263 → 340
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:361 → 415
      Homeobox; Homeobox domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049282.1 Alternate UMICH_Zoey_3.1

      Range
      31977103..31979449 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038506961.1 → XP_038362889.1  LOW QUALITY PROTEIN: POU domain, class 4, transcription factor 1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049763.1 Alternate UNSW_CanFamBas_1.0

      Range
      32014166..32016510 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038633542.1 → XP_038489470.1  LOW QUALITY PROTEIN: POU domain, class 4, transcription factor 1

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049243.1 Alternate UU_Cfam_GSD_1.0

      Range
      32086264..32088616 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038569375.1 → XP_038425303.1  POU domain, class 4, transcription factor 1

      UniProtKB/TrEMBL
      A0A8C0LMF5, A0A8C0M7A4, A0A8I3Q3P1
      Conserved Domains (2) summary
      smart00352
      Location:262 → 339
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:360 → 414
      Homeobox; Homeobox domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006604.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      31792017..31794362 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038456821.1 → XP_038312749.1  POU domain, class 4, transcription factor 1

      UniProtKB/TrEMBL
      A0A8C0LMF5, A0A8C0M7A4, A0A8I3Q3P1
      Conserved Domains (2) summary
      smart00352
      Location:262 → 339
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:360 → 414
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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