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    BPIFA1 BPI fold containing family A member 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 609982, updated on 17-Aug-2024

    Summary

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    Official Symbol
    BPIFA1provided by VGNC
    Official Full Name
    BPI fold containing family A member 1provided by VGNC
    Primary source
    VGNC:VGNC:38504
    See related
    Ensembl:ENSCAFG00845023690
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    PLUNC
    Orthologs
    human mouse all
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    Genomic context

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    See BPIFA1 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 24 NC_051828.1 (23161382..23168638)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 24 NC_006606.4 (22121008..22128270)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 24 NC_049245.1 (22978118..22985370)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 24 NC_049284.1 (22436703..22443958)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 24 NC_049765.1 (22546960..22554221)

    Chromosome 24 - NC_051828.1Genomic Context describing neighboring genes Neighboring gene BPI fold containing family A member 2 Neighboring gene uncharacterized LOC102151319 Neighboring gene BPI fold containing family A member 3 Neighboring gene U6 spliceosomal RNA Neighboring gene BPI fold containing family B member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic nomenclature for the PLUNC/PSP/BSP30/SMGB proteins as a subfamily of the BPI fold-containing superfamily. Bingle CD, et al. Biochem Soc Trans, 2011 Aug. PMID 21787333, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in antibacterial humoral response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in antimicrobial humoral immune response mediated by antimicrobial peptide IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response in nasopharyngeal-associated lymphoid tissue IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of single-species biofilm formation in or on host organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BPI fold-containing family A member 1
    Names
    palate, lung and nasal epithelium associated
    palate, lung and nasal epithelium carcinoma associated

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051828.1 Reference ROS_Cfam_1.0

      Range
      23161382..23168638
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038433510.1 → XP_038289438.1  BPI fold-containing family A member 1

      UniProtKB/TrEMBL
      A0A8C0RN22, A0A8I3PJK7, A0A8I3PXJ1
      Related
      ENSCAFP00845032938.1, ENSCAFT00845041999.1
      Conserved Domains (1) summary
      pfam01273
      Location:100 → 233
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049284.1 Alternate UMICH_Zoey_3.1

      Range
      22436703..22443958
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038508694.1 → XP_038364622.1  BPI fold-containing family A member 1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049765.1 Alternate UNSW_CanFamBas_1.0

      Range
      22546960..22554221
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038636261.1 → XP_038492189.1  BPI fold-containing family A member 1

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049245.1 Alternate UU_Cfam_GSD_1.0

      Range
      22978118..22985370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038572006.1 → XP_038427934.1  BPI fold-containing family A member 1

      UniProtKB/TrEMBL
      A0A8C0RN22, A0A8I3PJK7, A0A8I3PXJ1
      Conserved Domains (1) summary
      pfam01273
      Location:100 → 233
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006606.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      22121008..22128270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_847348.4 → XP_852441.1  BPI fold-containing family A member 1

      UniProtKB/TrEMBL
      A0A8C0Q7I5, A0A8C0QES4, A0A8P0N9U9, A0A8P0T6W8
      Conserved Domains (1) summary
      pfam01273
      Location:100 → 233
      LBP_BPI_CETP; LBP / BPI / CETP family, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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