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    BNIP1 BCL2 interacting protein 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 609594, updated on 17-Aug-2024

    Summary

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    Official Symbol
    BNIP1provided by VGNC
    Official Full Name
    BCL2 interacting protein 1provided by VGNC
    Primary source
    VGNC:VGNC:38492
    See related
    Ensembl:ENSCAFG00845000706
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See BNIP1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (39626299..39674446, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (39200999..39248948, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (40141840..40190011, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (39443866..39491233, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (39632894..39680957, complement)

    Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene stanniocalcin 2 Neighboring gene uncharacterized LOC119871506 Neighboring gene NK2 homeobox 5 Neighboring gene CREB3 regulatory factor Neighboring gene ATPase H+ transporting V0 subunit e1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vesicle transport protein SEC20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051808.1 Reference ROS_Cfam_1.0

      Range
      39626299..39674446 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038663339.1 → XP_038519267.1  vesicle transport protein SEC20 isoform X2

      Conserved Domains (1) summary
      cl22856
      Location:132 → 174
      SNARE; SNARE motif

    2. XM_038663338.1 → XP_038519266.1  vesicle transport protein SEC20 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KFS5, A0A8C0LX14, A0A8C0PNM7
      Related
      ENSCAFP00845000894.1, ENSCAFT00845001173.1
      Conserved Domains (1) summary
      cd15865
      Location:132 → 224
      SNARE_SEC20; SNARE motif of SEC20

    3. XM_038663340.1 → XP_038519268.1  vesicle transport protein SEC20 isoform X3

      Conserved Domains (1) summary
      cl22856
      Location:132 → 164
      SNARE; SNARE motif

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049264.1 Alternate UMICH_Zoey_3.1

      Range
      39443866..39491233 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038473656.1 → XP_038329584.1  vesicle transport protein SEC20 isoform X2

      Conserved Domains (1) summary
      cl22856
      Location:132 → 174
      SNARE; SNARE motif

    2. XM_038473655.1 → XP_038329583.1  vesicle transport protein SEC20 isoform X1

      Conserved Domains (1) summary
      cd15865
      Location:132 → 224
      SNARE_SEC20; SNARE motif of SEC20

    3. XM_038473657.1 → XP_038329585.1  vesicle transport protein SEC20 isoform X3

      Conserved Domains (1) summary
      cl22856
      Location:132 → 164
      SNARE; SNARE motif

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

      Range
      39632894..39680957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038599036.1 → XP_038454964.1  vesicle transport protein SEC20 isoform X2

      Conserved Domains (1) summary
      cl22856
      Location:132 → 174
      SNARE; SNARE motif

    2. XM_038599035.1 → XP_038454963.1  vesicle transport protein SEC20 isoform X1

      Conserved Domains (1) summary
      cd15865
      Location:132 → 224
      SNARE_SEC20; SNARE motif of SEC20

    3. XM_038599037.1 → XP_038454965.1  vesicle transport protein SEC20 isoform X3

      Conserved Domains (1) summary
      cl22856
      Location:132 → 164
      SNARE; SNARE motif

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

      Range
      40141840..40190011 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038534736.1 → XP_038390664.1  vesicle transport protein SEC20 isoform X2

      Conserved Domains (1) summary
      cl22856
      Location:132 → 174
      SNARE; SNARE motif

    2. XM_038534735.1 → XP_038390663.1  vesicle transport protein SEC20 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KFS5, A0A8C0LX14, A0A8C0PNM7
      Conserved Domains (1) summary
      cd15865
      Location:132 → 224
      SNARE_SEC20; SNARE motif of SEC20

    3. XM_038534737.1 → XP_038390665.1  vesicle transport protein SEC20 isoform X3

      Conserved Domains (1) summary
      cl22856
      Location:132 → 164
      SNARE; SNARE motif

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      39200999..39248948 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005619200.4 → XP_005619257.1  vesicle transport protein SEC20 isoform X2

      Conserved Domains (1) summary
      cl22856
      Location:132 → 174
      SNARE; SNARE motif

    2. XM_847735.6 → XP_852828.1  vesicle transport protein SEC20 isoform X1

      See identical proteins and their annotated locations for XP_852828.1

      UniProtKB/TrEMBL
      A0A8C0KFS5, A0A8C0LX14, A0A8C0PNM7
      Conserved Domains (1) summary
      cd15865
      Location:132 → 224
      SNARE_SEC20; SNARE motif of SEC20

    3. XM_022417686.2 → XP_022273394.1  vesicle transport protein SEC20 isoform X3

      Conserved Domains (1) summary
      cl22856
      Location:132 → 164
      SNARE; SNARE motif
    Nucleotide Protein
    Heading Accession and Version

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