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    ZXDC ZXD family zinc finger C [ Canis lupus familiaris (dog) ]

    Gene ID: 609097, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZXDCprovided by VGNC
    Official Full Name
    ZXD family zinc finger Cprovided by VGNC
    Primary source
    VGNC:VGNC:48867
    See related
    Ensembl:ENSCAFG00845012175
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See ZXDC in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (631339..676098, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (653995..698750, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (647116..691865, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (359284..404039, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (687998..732599, complement)

    Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111091217 Neighboring gene cilia and flagella associated protein 100 Neighboring gene urocanate hydratase 1 Neighboring gene carbohydrate sulfotransferase 13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein ZXDC; LOW QUALITY PROTEIN: zinc finger protein ZXDC

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051824.1 Reference ROS_Cfam_1.0

      Range
      631339..676098 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038426715.1 → XP_038282643.1  zinc finger protein ZXDC

      UniProtKB/TrEMBL
      A0A8C0TV86, A0A8I3NM04, A0A8I3NX22, A0A8P0PS97
      Related
      ENSCAFP00845017182.1, ENSCAFT00845021844.1
      Conserved Domains (2) summary
      COG5048
      Location:307 → 535
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:357 → 376
      ZF_C2H2; C2H2 Zn finger [structural motif]

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049280.1 Alternate UMICH_Zoey_3.1

      Range
      359284..404039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038502524.1 → XP_038358452.1  zinc finger protein ZXDC

      Conserved Domains (2) summary
      COG5048
      Location:307 → 535
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:357 → 376
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RNA

    1. XR_005340727.1 RNA Sequence

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

      Range
      687998..732599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038629557.1 → XP_038485485.1  LOW QUALITY PROTEIN: zinc finger protein ZXDC

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

      Range
      647116..691865 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038565436.1 → XP_038421364.1  zinc finger protein ZXDC

      UniProtKB/TrEMBL
      A0A8C0TV86, A0A8I3NX22

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      653995..698750 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038455904.1 → XP_038311832.1  zinc finger protein ZXDC

      UniProtKB/TrEMBL
      A0A8C0TV86, A0A8I3NM04, A0A8I3NX22, A0A8P0PS97
      Conserved Domains (2) summary
      COG5048
      Location:307 → 535
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:357 → 376
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RNA

    1. XR_005312829.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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