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    ECM1 extracellular matrix protein 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 608791, updated on 5-Mar-2024

    Summary

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    Gene symbol
    ECM1
    Gene description
    extracellular matrix protein 1
    See related
    Ensembl:ENSCAFG00845018089
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See ECM1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (60711672..60717511)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (59142307..59148147)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (60353552..60359392)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (59542109..59547950)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (59625886..59631725)

    Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene regulation of nuclear pre-mRNA domain containing 2 Neighboring gene uncharacterized LOC111090718 Neighboring gene uncharacterized LOC119863989 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC119863990 Neighboring gene ADAMTS like 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of bone mineralization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: extracellular matrix protein 1; extracellular matrix protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051821.1 Reference ROS_Cfam_1.0

      Range
      60711672..60717511
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038423067.1 → XP_038278995.1  LOW QUALITY PROTEIN: extracellular matrix protein 1

      UniProtKB/TrEMBL
      A0A8P0NZY6
      Related
      ENSCAFP00845025288.1, ENSCAFT00845032349.1
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 543
      ECM1; Extracellular matrix protein 1 (ECM1)

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049277.1 Alternate UMICH_Zoey_3.1

      Range
      59542109..59547950
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038499564.1 → XP_038355492.1  LOW QUALITY PROTEIN: extracellular matrix protein 1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

      Range
      59625886..59631725
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038626231.1 → XP_038482159.1  LOW QUALITY PROTEIN: extracellular matrix protein 1

      Conserved Domains (1) summary
      pfam05782
      Location:5 → 543
      ECM1; Extracellular matrix protein 1 (ECM1)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

      Range
      60353552..60359392
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038562134.1 → XP_038418062.1  LOW QUALITY PROTEIN: extracellular matrix protein 1

      UniProtKB/TrEMBL
      A0A8P0NZY6
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 543
      ECM1; Extracellular matrix protein 1 (ECM1)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      59142307..59148147
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_845921.6 → XP_851014.2  LOW QUALITY PROTEIN: extracellular matrix protein 1

      UniProtKB/TrEMBL
      A0A8P0NZY6
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 543
      ECM1; Extracellular matrix protein 1 (ECM1)
    Nucleotide Protein
    Heading Accession and Version

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