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    CXCL13 C-X-C motif chemokine ligand 13 [ Canis lupus familiaris (dog) ]

    Gene ID: 608156, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CXCL13provided by VGNC
    Official Full Name
    C-X-C motif chemokine ligand 13provided by VGNC
    Primary source
    VGNC:VGNC:39747
    See related
    Ensembl:ENSCAFG00845015471
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See CXCL13 in Genome Data Viewer
    Location:
    chromosome: 32
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 32 NC_051836.1 (2073585..2079610)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 32 NC_006614.4 (39837784..39843805, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 32 NC_049253.1 (38148529..38154567, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 32 NC_049292.1 (2071444..2077479)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 32 NC_049773.1 (2019776..2025803)

    Chromosome 32 - NC_051836.1Genomic Context describing neighboring genes Neighboring gene cyclin G2 Neighboring gene uncharacterized LOC111093629 Neighboring gene CCR4-NOT transcription complex subunit 6 like Neighboring gene mitochondrial ribosomal protein L1 Neighboring gene uncharacterized LOC111093572

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CXCR chemokine receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chemokine activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in antimicrobial humoral immune response mediated by antimicrobial peptide IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to lipopolysaccharide IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chemokine-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neutrophil chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C-X-C motif chemokine 13
    Names
    chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051836.1 Reference ROS_Cfam_1.0

      Range
      2073585..2079610
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038443903.1 → XP_038299831.1  C-X-C motif chemokine 13

      UniProtKB/TrEMBL
      A0A8C0T5A2, A0A8I3NMN5
      Related
      ENSCAFP00845021696.1, ENSCAFT00845027573.1
      Conserved Domains (1) summary
      cd00273
      Location:30 → 91
      Chemokine_CXC; 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteine residues; includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; many members contain an RCxC motif ...

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049292.1 Alternate UMICH_Zoey_3.1

      Range
      2071444..2077479
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038518308.1 → XP_038374236.1  C-X-C motif chemokine 13

      Conserved Domains (1) summary
      cd00273
      Location:30 → 91
      Chemokine_CXC; 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteine residues; includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; many members contain an RCxC motif ...

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049773.1 Alternate UNSW_CanFamBas_1.0

      Range
      2019776..2025803
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038646233.1 → XP_038502161.1  C-X-C motif chemokine 13

      Conserved Domains (1) summary
      cd00273
      Location:30 → 91
      Chemokine_CXC; 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteine residues; includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; many members contain an RCxC motif ...

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049253.1 Alternate UU_Cfam_GSD_1.0

      Range
      38148529..38154567 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038582355.1 → XP_038438283.1  C-X-C motif chemokine 13

      UniProtKB/TrEMBL
      A0A8C0T5A2, A0A8I3NMN5
      Conserved Domains (1) summary
      cd00273
      Location:30 → 91
      Chemokine_CXC; 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteine residues; includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; many members contain an RCxC motif ...

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006614.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      39837784..39843805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_845089.6 → XP_850182.1  C-X-C motif chemokine 13

      UniProtKB/TrEMBL
      A0A8C0T5A2, A0A8I3NMN5
      Conserved Domains (1) summary
      cd00273
      Location:30 → 91
      Chemokine_CXC; 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteine residues; includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; many members contain an RCxC motif ...
    Nucleotide Protein
    Heading Accession and Version

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