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    PDSS1 decaprenyl diphosphate synthase subunit 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 607944, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PDSS1provided by VGNC
    Official Full Name
    decaprenyl diphosphate synthase subunit 1provided by VGNC
    Primary source
    VGNC:VGNC:44394
    See related
    Ensembl:ENSCAFG00845003791
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See PDSS1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 2 NC_051806.1 (5249154..5292861, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 2 NC_006584.4 (5812428..5856082, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 2 NC_049223.1 (4870252..4913950, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 2 NC_049262.1 (4626238..4669959, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 2 NC_049743.1 (4705108..4748789, complement)

    Chromosome 2 - NC_051806.1Genomic Context describing neighboring genes Neighboring gene microtubule associated serine/threonine kinase like Neighboring gene acyl-CoA binding domain containing 5 Neighboring gene abl interactor 1 Neighboring gene U6 spliceosomal RNA Neighboring gene E3 ubiquitin-protein ligase Mdm2-like Neighboring gene uncharacterized LOC111091234 Neighboring gene amyloid beta precursor protein binding family B member 1 interacting protein Neighboring gene uncharacterized LOC119870094

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables prenyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in isoprenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquinone biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    decaprenyl-diphosphate synthase subunit 1; all trans-polyprenyl-diphosphate synthase PDSS1
    Names
    prenyl (decaprenyl) diphosphate synthase, subunit 1
    XP_022262024.1
    XP_022262027.1
    XP_022262033.1
    XP_038311852.1
    XP_038311854.1
    XP_038311862.1
    XP_038324980.1
    XP_038324981.1
    XP_038324982.1
    XP_038324983.1
    XP_038324984.1
    XP_038324985.1
    XP_038385679.1
    XP_038385680.1
    XP_038385681.1
    XP_038385683.1
    XP_038385684.1
    XP_038385685.1
    XP_038449928.1
    XP_038449929.1
    XP_038449930.1
    XP_038449931.1
    XP_038449932.1
    XP_038449934.1
    XP_038514008.1
    XP_038514009.1
    XP_038514010.1
    XP_038514011.1
    XP_038514012.1
    XP_038514013.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051806.1 Reference ROS_Cfam_1.0

      Range
      5249154..5292861 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038658080.1 → XP_038514008.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LM81, A0A8C0Q4A7, A0A8C0R7X6, A0A8I3MVX8
      Related
      ENSCAFP00845005384.1, ENSCAFT00845006771.1
      Conserved Domains (1) summary
      PLN02890
      Location:83 → 408
      PLN02890; geranyl diphosphate synthase

    2. XM_038658083.1 → XP_038514011.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0LM81
      Conserved Domains (1) summary
      PLN02890
      Location:35 → 360
      PLN02890; geranyl diphosphate synthase

    3. XM_038658082.1 → XP_038514010.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0LM81
      Conserved Domains (1) summary
      PLN02890
      Location:40 → 365
      PLN02890; geranyl diphosphate synthase

    4. XM_038658081.1 → XP_038514009.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0LM81
      Conserved Domains (1) summary
      PLN02890
      Location:78 → 403
      PLN02890; geranyl diphosphate synthase

    5. XM_038658085.1 → XP_038514013.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X6

      Conserved Domains (1) summary
      cl00210
      Location:1 → 243
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

    6. XM_038658084.1 → XP_038514012.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X5

      Conserved Domains (1) summary
      cd00685
      Location:114 → 336
      Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail

    RNA

    1. XR_005422742.1 RNA Sequence

    2. XR_005422740.1 RNA Sequence

    3. XR_005422741.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049262.1 Alternate UMICH_Zoey_3.1

      Range
      4626238..4669959 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038469052.1 → XP_038324980.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X1

      Conserved Domains (1) summary
      PLN02890
      Location:83 → 408
      PLN02890; geranyl diphosphate synthase

    2. XM_038469055.1 → XP_038324983.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X4

      Conserved Domains (1) summary
      PLN02890
      Location:35 → 360
      PLN02890; geranyl diphosphate synthase

    3. XM_038469054.1 → XP_038324982.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X3

      Conserved Domains (1) summary
      PLN02890
      Location:40 → 365
      PLN02890; geranyl diphosphate synthase

    4. XM_038469053.1 → XP_038324981.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X2

      Conserved Domains (1) summary
      PLN02890
      Location:78 → 403
      PLN02890; geranyl diphosphate synthase

    5. XM_038469057.1 → XP_038324985.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X6

      Conserved Domains (1) summary
      cl00210
      Location:1 → 243
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

    6. XM_038469056.1 → XP_038324984.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X5

      Conserved Domains (1) summary
      cd00685
      Location:114 → 336
      Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail

    RNA

    1. XR_005321551.1 RNA Sequence

    2. XR_005321549.1 RNA Sequence

    3. XR_005321550.1 RNA Sequence

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049743.1 Alternate UNSW_CanFamBas_1.0

      Range
      4705108..4748789 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038594000.1 → XP_038449928.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X1

    2. XM_038594003.1 → XP_038449931.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X4

    3. XM_038594002.1 → XP_038449930.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X3

    4. XM_038594001.1 → XP_038449929.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X2

    5. XM_038594006.1 → XP_038449934.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X6

    6. XM_038594004.1 → XP_038449932.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X5

    RNA

    1. XR_005389716.1 RNA Sequence

    2. XR_005389714.1 RNA Sequence

    3. XR_005389715.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049223.1 Alternate UU_Cfam_GSD_1.0

      Range
      4870252..4913950 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038529751.1 → XP_038385679.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LM81, A0A8C0Q4A7, A0A8C0R7X6, A0A8I3MVX8
      Conserved Domains (1) summary
      PLN02890
      Location:83 → 408
      PLN02890; geranyl diphosphate synthase

    2. XM_038529755.1 → XP_038385683.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0LM81
      Conserved Domains (1) summary
      PLN02890
      Location:35 → 360
      PLN02890; geranyl diphosphate synthase

    3. XM_038529753.1 → XP_038385681.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0LM81
      Conserved Domains (1) summary
      PLN02890
      Location:40 → 365
      PLN02890; geranyl diphosphate synthase

    4. XM_038529752.1 → XP_038385680.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0LM81
      Conserved Domains (1) summary
      PLN02890
      Location:78 → 403
      PLN02890; geranyl diphosphate synthase

    5. XM_038529757.1 → XP_038385685.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X6

      Conserved Domains (1) summary
      cl00210
      Location:1 → 243
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

    6. XM_038529756.1 → XP_038385684.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X5

      Conserved Domains (1) summary
      cd00685
      Location:114 → 336
      Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail

    RNA

    1. XR_005355163.1 RNA Sequence

    2. XR_005355161.1 RNA Sequence

    3. XR_005355162.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      5812428..5856082 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038455924.1 → XP_038311852.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LM81, A0A8C0Q4A7, A0A8C0R7X6, A0A8I3MVX8
      Conserved Domains (1) summary
      PLN02890
      Location:83 → 408
      PLN02890; geranyl diphosphate synthase

    2. XM_022406319.2 → XP_022262027.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0LM81
      Conserved Domains (1) summary
      PLN02890
      Location:35 → 360
      PLN02890; geranyl diphosphate synthase

    3. XM_022406316.2 → XP_022262024.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0LM81
      Conserved Domains (1) summary
      PLN02890
      Location:40 → 365
      PLN02890; geranyl diphosphate synthase

    4. XM_038455926.1 → XP_038311854.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0LM81
      Conserved Domains (1) summary
      PLN02890
      Location:78 → 403
      PLN02890; geranyl diphosphate synthase

    5. XM_022406325.2 → XP_022262033.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X6

      Conserved Domains (1) summary
      cl00210
      Location:1 → 243
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

    6. XM_038455934.1 → XP_038311862.1  all trans-polyprenyl-diphosphate synthase PDSS1 isoform X5

      Conserved Domains (1) summary
      cd00685
      Location:114 → 336
      Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail

    RNA

    1. XR_005312841.1 RNA Sequence

    2. XR_005312837.1 RNA Sequence

    3. XR_005312838.1 RNA Sequence

    Nucleotide Protein
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