U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    PGM5P2 phosphoglucomutase 5 pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 595135, updated on 17-Sep-2024

    Summary

    Official Symbol
    PGM5P2provided by HGNC
    Official Full Name
    phosphoglucomutase 5 pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:18965
    See related
    Ensembl:ENSG00000290923 AllianceGenome:HGNC:18965
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in prostate (RPKM 12.2), esophagus (RPKM 9.3) and 17 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See PGM5P2 in Genome Data Viewer
    Location:
    9p11.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (41007011..41074625, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (42220387..42287983)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (69080240..69147854, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak7256 silencer Neighboring gene microRNA 1299 Neighboring gene uncharacterized LOC107986997 Neighboring gene NANOG hESC enhancer GRCh37_chr9:68695497-68695998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:69048303-69048804 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:68712489-68713157 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:68725219-68725948 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28424 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28425 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28426 Neighboring gene FSHD region gene 1 family member H, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19920 Neighboring gene uncharacterized LOC124902161 Neighboring gene uncharacterized LOC105376058 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:69179459-69180234 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:69180235-69181009 Neighboring gene long intergenic non-protein coding RNA 3025

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002836.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL353763, BC007887, BX255923
      Related
      ENST00000613141.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      41007011..41074625 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      42220387..42287983
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)