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    ss18l2 synovial sarcoma translocation gene on chromosome 18-like 2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549763, updated on 17-Aug-2024

    Summary

    Official Symbol
    ss18l2provided by Xenbase
    Official Full Name
    synovial sarcoma translocation gene on chromosome 18-like 2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5815423
    See related
    Ensembl:ENSXETG00000043471
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    deb1
    Orthologs
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    Genomic context

    See ss18l2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (67676929..67682453, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (19518862..19524247, complement)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene glucose-6-phosphate isomerase Neighboring gene granule associated Rac and RHOG effector 1 Neighboring gene LSM14A mRNA processing body assembly factor Neighboring gene potassium channel tetramerization domain containing 15

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    SS18-like protein 2
    Names
    differentially expressed in B16F10 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017009.2NP_001017009.1  SS18-like protein 2

      Status: PROVISIONAL

      Source sequence(s)
      CR762275
      UniProtKB/TrEMBL
      A0A803JL27
      Related
      ENSXETP00000108647.1, ENSXETT00000120270.1
      Conserved Domains (1) summary
      pfam05030
      Location:1471
      SSXT; SSXT protein (N-terminal region)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      67676929..67682453 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031900108.1XP_031755968.1  SS18-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A803JL27
      Conserved Domains (1) summary
      pfam05030
      Location:1471
      SSXT; SSXT protein (N-terminal region)