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    nsmce3 NSE3 homolog, SMC5-SMC6 complex component [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549684, updated on 17-Aug-2024

    Summary

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    Official Symbol
    nsmce3provided by Xenbase
    Official Full Name
    NSE3 homolog, SMC5-SMC6 complex componentprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-1007635
    See related
    Ensembl:ENSXETG00000022031
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    hca4; nse3; ndnl2; magee1; mageg1; magel3
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    Genomic context

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    See nsmce3 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (25042418..25049553, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (8604664..8611844)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116406748 Neighboring gene uncharacterized LOC108645248 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 Neighboring gene inter-alpha-trypsin inhibitor heavy chain family member 6 Neighboring gene PHD finger protein 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure Basis for Shaping the Nse4 Protein by the Nse1 and Nse3 Dimer within the Smc5/6 Complex. Jo A, et al. J Mol Biol, 2021 Apr 30. PMID 33676928, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Structure Basis for Shaping the Nse4 Protein by the Nse1 and Nse3 Dimer within the Smc5/6 Complex.
      Title: Structure Basis for Shaping the Nse4 Protein by the Nse1 and Nse3 Dimer within the Smc5/6 Complex.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    NSE3 homolog, SMC5-SMC6 complex component
    Names
    melanoma antigen family E, 1
    necdin-like 2, SMC5-SMC6 complex component

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001016930.2 → NP_001016930.1  NSE3 homolog, SMC5-SMC6 complex component

      See identical proteins and their annotated locations for NP_001016930.1

      Status: PROVISIONAL

      Source sequence(s)
      CR762194
      UniProtKB/TrEMBL
      A9JSA2
      Conserved Domains (1) summary
      pfam01454
      Location:34 → 202
      MAGE; MAGE family

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      25042418..25049553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012954226.3 → XP_012809680.1  NSE3 homolog, SMC5-SMC6 complex component isoform X1

      See identical proteins and their annotated locations for XP_012809680.1

      UniProtKB/TrEMBL
      A0A6I8S0H0
      Conserved Domains (1) summary
      pfam01454
      Location:59 → 227
      MAGE; MAGE family

    2. XM_012954225.2 → XP_012809679.1  NSE3 homolog, SMC5-SMC6 complex component isoform X1

      See identical proteins and their annotated locations for XP_012809679.1

      UniProtKB/TrEMBL
      A0A6I8S0H0
      Related
      ENSXETP00000090422.1, ENSXETT00000088052.2
      Conserved Domains (1) summary
      pfam01454
      Location:59 → 227
      MAGE; MAGE family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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