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    c7h1orf50 chromosome 7 C1orf50 homolog [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549419, updated on 17-Aug-2024

    Summary

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    Official Symbol
    c7h1orf50provided by Xenbase
    Official Full Name
    chromosome 7 C1orf50 homologprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-1004912
    See related
    Ensembl:ENSXETG00000012074
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    c1orf50
    Orthologs
    human mouse all
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    Genomic context

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    See c7h1orf50 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (94463669..94470602, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (68570116..68577064)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene Wnt family member 4 Neighboring gene cell division cycle 42 Neighboring gene adaptor related protein complex 5 subunit beta 1 Neighboring gene SPOUT domain containing methyltransferase 1 Neighboring gene prolyl 3-hydroxylase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C1orf50 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001016665.3 → NP_001016665.1  uncharacterized protein C1orf50 homolog

      See identical proteins and their annotated locations for NP_001016665.1

      Status: PROVISIONAL

      Source sequence(s)
      BC158946
      UniProtKB/TrEMBL
      A0A6I8R2W8, B0JYW8
      Related
      ENSXETP00000014049.4, ENSXETT00000014049.5
      Conserved Domains (1) summary
      pfam10504
      Location:16 → 166
      DUF2452; Protein of unknown function (DUF2452)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      94463669..94470602 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012966617.3 → XP_012822071.1  uncharacterized protein C1orf50 homolog isoform X1

      See identical proteins and their annotated locations for XP_012822071.1

      UniProtKB/TrEMBL
      A0A6I8R2W8, B0JYW8
      Related
      ENSXETP00000078660.1, ENSXETT00000092713.2
      Conserved Domains (1) summary
      pfam10504
      Location:16 → 166
      DUF2452; Protein of unknown function (DUF2452)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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