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    tma16 translation machinery associated 16 homolog [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549385, updated on 17-Aug-2024

    Summary

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    Official Symbol
    tma16provided by Xenbase
    Official Full Name
    translation machinery associated 16 homologprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-1015317
    See related
    Ensembl:ENSXETG00000004891
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    c4orf43
    Orthologs
    human mouse all
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    Genomic context

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    See tma16 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (51614696..51649599, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (42388192..42423318, complement)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100494224 Neighboring gene membrane associated ring-CH-type finger 1 Neighboring gene neuropeptide Y receptor Y5 Neighboring gene neuropeptide Y receptor Y1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables preribosome binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within ribosomal large subunit biogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    translation machinery-associated protein 16
    Names
    UPF0534 protein C4orf43 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001016631.3 → NP_001016631.1  translation machinery-associated protein 16

      See identical proteins and their annotated locations for NP_001016631.1

      Status: PROVISIONAL

      Source sequence(s)
      BC135799
      UniProtKB/Swiss-Prot
      A4II15
      UniProtKB/TrEMBL
      A0A803K6K7
      Related
      ENSXETP00000010618.3, ENSXETT00000010618.5
      Conserved Domains (1) summary
      pfam11176
      Location:12 → 161
      Tma16; Translation machinery-associated protein 16

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      51614696..51649599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012962584.3 → XP_012818038.1  translation machinery-associated protein 16 isoform X1

      UniProtKB/TrEMBL
      A0A6I8RQG1, A0A803K6K7
      Related
      ENSXETP00000087024.1, ENSXETT00000095083.2
      Conserved Domains (1) summary
      pfam11176
      Location:29 → 178
      Tma16; Translation machinery-associated protein 16
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A4II15.1 GenPept UniProtKB/Swiss-Prot:A4II15

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.