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    LOC542764 superoxide dismutase 3 [ Zea mays ]

    Gene ID: 542764, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC542764
    Gene description
    superoxide dismutase 3
    Locus tag
    ZEAMMB73_Zm00001d037859
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    sod3; SOD3.1; SODA.4; GRMZM2G059991
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    Genomic context

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    See LOC542764 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 6 NC_050101.1 (146855550..146859685)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 6 NC_024464.2 (140001982..140006117)

    Chromosome 6 - NC_050101.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103630187 Neighboring gene uncharacterized LOC103630188 Neighboring gene uncharacterized LOC100276957 Neighboring gene hexokinase-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of a cDNA for mitochondrial manganese superoxide dismutase (SOD-3) of maize and its relation to other manganese superoxide dismutases. White JA, et al. Biochim Biophys Acta, 1988 Nov 10. PMID 2461225
    2. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables superoxide dismutase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in superoxide metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    superoxide dismutase [Mn] 3.1, mitochondrial
    Names
    SodA
    ncr(sod3a)
    superoxide dismutase-3 precursor (AA -32 to 203)
    NP_001105742.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001112272.3 → NP_001105742.2  superoxide dismutase [Mn] 3.1, mitochondrial precursor

      Status: VALIDATED

      Source sequence(s)
      BT033613, DY689621
      UniProtKB/Swiss-Prot
      P09233
      UniProtKB/TrEMBL
      B4F925
      Conserved Domains (1) summary
      PLN02471
      Location:1 → 235
      PLN02471; superoxide dismutase [Mn]

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050101.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      146855550..146859685
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P09233.1 GenPept UniProtKB/Swiss-Prot:P09233

    Gene LinkOut

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    Research Materials