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    LOC542393 phosphoenolpyruvate carboxylase 4 [ Zea mays ]

    Gene ID: 542393, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC542393
    Gene description
    phosphoenolpyruvate carboxylase 4
    Locus tag
    ZEAMMB73_Zm00001d020057
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    pep; pep4; GRMZM2G473001
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    Genomic context

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    See LOC542393 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 7 NC_050102.1 (90705409..90710822, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 7 NC_024465.2 (89268033..89273446, complement)

    Chromosome 7 - NC_050102.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103632555 Neighboring gene polyadenylate-binding protein-interacting protein 11 Neighboring gene uncharacterized LOC109940864 Neighboring gene phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular evolution of phosphoenolpyruvate carboxylase for C4 photosynthesis in maize: comparison of its cDNA sequence with a newly isolated cDNA encoding an isozyme involved in the anaplerotic function. Kawamura T, et al. J Biochem, 1992 Jul. PMID 1429504
    2. Characterisation of the phosphoenolpyruvate carboxylase gene family in sugarcane (Saccharum spp.). Besnard G, et al. Theor Appl Genet, 2003 Aug. PMID 12759729
    3. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphoenolpyruvate carboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbon fixation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in leaf development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphoenolpyruvate carboxylase 2
    Names
    MR32-MseI
    PEPC 2
    PEPCase 2
    PepC2
    Ppc-
    QAN24f10
    QCH5g04
    gnp_QAN24f10
    gnp_QCH5g04
    gpm372
    gpm879
    phosphoenolpyruvate carboxylase3
    six61489
    six61489(466)
    NP_001105438.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111968.1 → NP_001105438.1  phosphoenolpyruvate carboxylase 2

      See identical proteins and their annotated locations for NP_001105438.1

      Status: PROVISIONAL

      Source sequence(s)
      X61489
      UniProtKB/Swiss-Prot
      P51059
      UniProtKB/TrEMBL
      A0A1D6I1V3
      Conserved Domains (2) summary
      COG2352
      Location:36 → 967
      Ppc; Phosphoenolpyruvate carboxylase [Energy production and conversion]
      pfam00311
      Location:165 → 967
      PEPcase; Phosphoenolpyruvate carboxylase

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050102.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      90705409..90710822 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P51059.1 GenPept UniProtKB/Swiss-Prot:P51059

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials