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    LOC542321 light harvesting chlorophyll a/b binding protein 6 [ Zea mays ]

    Gene ID: 542321, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC542321
    Gene description
    light harvesting chlorophyll a/b binding protein 6
    Locus tag
    ZEAMMB73_Zm00001d026599
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    CP24; lhcb6; Lhcb6-1; GRMZM2G092427
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    Genomic context

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    See LOC542321 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 10 NC_050105.1 (150168727..150169927)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 10 NC_024468.2 (148715826..148717026)

    Chromosome 10 - NC_050105.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100275789 Neighboring gene ubiquinone biosynthesis protein COQ4 Neighboring gene protein S-acyltransferase 11-like Neighboring gene uncharacterized LOC100273701 Neighboring gene microRNA MIR396d

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    2. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis, light harvesting in photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    light harvesting chlorophyll a/b binding protein 6
    Names
    chlorophyll a-b binding protein CP24
    light harvesting chlorophyll a/b binding protein6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111905.2 → NP_001105375.2  light harvesting chlorophyll a/b binding protein 6

      See identical proteins and their annotated locations for NP_001105375.2

      Status: VALIDATED

      Source sequence(s)
      CABHLF010000007, EC887738
      UniProtKB/TrEMBL
      A0A3L6GA69, K7TXI5
      Conserved Domains (1) summary
      PLN00170
      Location:44 → 248
      PLN00170; photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050105.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      150168727..150169927
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials