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    LOC542164 elongated mesocotyl 1 [ Zea mays ]

    Gene ID: 542164, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC542164
    Gene description
    elongated mesocotyl 1
    Locus tag
    ZEAMMB73_Zm00001d011876
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    Hy2; elm1; GRMZM5G861678
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    Genomic context

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    See LOC542164 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 8 NC_050103.1 (164966845..164970499)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 8 NC_024466.2 (163614289..163617943)

    Chromosome 8 - NC_050103.1Genomic Context describing neighboring genes Neighboring gene Essential protein Yae1 N-terminal Neighboring gene calmodulin binding protein PICBP Neighboring gene probable glutathione S-transferase Neighboring gene small nucleolar RNA Z247 Neighboring gene Protein OSB2 chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Elm1 (ZmHy2) gene of maize encodes a phytochromobilin synthase. Sawers RJ, et al. Plant Physiol, 2004 Sep. PMID 15347785, Free PMC Article
    2. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cobalt ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phytochromobilin:ferredoxin oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phytochromobilin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    elongated mesocotyl 1
    Names
    PZB00160
    Phytochromobilin:ferredoxin oxidoreductase chloroplastic
    ZmHy2
    nPZB00160.4
    phycoerythrobilin ferredoxin oxidoreductase
    phytochromobilin synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111786.1 → NP_001105256.1  elongated mesocotyl 1

      See identical proteins and their annotated locations for NP_001105256.1

      Status: PROVISIONAL

      Source sequence(s)
      AY560384
      UniProtKB/TrEMBL
      A0A1D6G4L5, A0A3L6DIR0, A0A8J8Y5Y8, Q6E5A3
      Conserved Domains (1) summary
      pfam05996
      Location:18 → 244
      Fe_bilin_red; Ferredoxin-dependent bilin reductase

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050103.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      164966845..164970499
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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