U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC541951 high mobility group box protein 2 [ Zea mays ]

    Gene ID: 541951, updated on 18-Aug-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC541951
    Gene description
    high mobility group box protein 2
    Locus tag
    ZEAMMB73_Zm00001d017555
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    hmg2; nfd104; GRMZM2G013821
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC541951 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (198432012..198433831)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (199470045..199471864)

    Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene BZIP transcription factor Neighboring gene uncharacterized LOC109939861 Neighboring gene transfer RNA threonine (anticodon CGU) Neighboring gene uncharacterized LOC100274361

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Maize chromosomal HMGc. Two closely related structure-specific DNA-binding proteins specify a second type of plant high mobility group box protein. Grasser KD, et al. J Biol Chem, 1996 Dec 20. PMID 8955131
    2. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    3. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    high mobility group box protein 2
    Names
    HMG transcription factor
    HMG-like nucleosome/chromatin assembly factor D
    HMG1/2-like protein
    HMGc1
    QCI21c11
    gnp_QCI21c11b
    gpm936b
    high mobility group box protein2
    nfd104a
    nucleosome/chromatin assembly factor D
    std486073B08

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001294311.2 → NP_001281240.1  high mobility group box protein 2

      See identical proteins and their annotated locations for NP_001281240.1

      Status: VALIDATED

      Source sequence(s)
      BT054508, FL122228
      UniProtKB/TrEMBL
      A0A3L6EQM2, A0A8J8XB54, B6T2V7, P93630, Q8W511
      Conserved Domains (1) summary
      cd01390
      Location:33 → 99
      HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      198432012..198433831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001111605.1: Suppressed sequence

      Description
      NM_001111605.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.

    2. NM_001175458.1: Suppressed sequence

      Description
      NM_001175458.1: This RefSeq was suppressed because the instantiating accession is a chimera.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials