U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    TSC22D2 TSC22 domain family member 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 541277, updated on 4-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TSC22D2provided by VGNC
    Official Full Name
    TSC22 domain family member 2provided by VGNC
    Primary source
    VGNC:VGNC:36409
    See related
    BGD:BT16345; Ensembl:ENSBTAG00000018402
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TSC22D2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (117666900..117718677, complement)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene eukaryotic translation initiation factor 2A Neighboring gene stress associated endoplasmic reticulum protein 1 Neighboring gene uncharacterized LOC104971004 Neighboring gene uncharacterized LOC101905340

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The small GTPase RAB28 is required for phagocytosis of cone outer segments by the murine retinal pigmented epithelium. Ying G, et al. J Biol Chem, 2018 Nov 9. PMID 30228185, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    TSC22 domain family protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001144101.3 → NP_001137573.1  TSC22 domain family protein 2

      See identical proteins and their annotated locations for NP_001137573.1

      Status: INFERRED

      Source sequence(s)
      NKLS02000001
      UniProtKB/TrEMBL
      E1BCC2
      Related
      ENSBTAP00000024485.5, ENSBTAT00000024485.6
      Conserved Domains (1) summary
      pfam01166
      Location:689 → 745
      TSC22; TSC-22/dip/bun family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      117666900..117718677 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005201819.5 → XP_005201876.1  TSC22 domain family protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9SQ96
      Related
      ENSBTAP00000087541.1, ENSBTAT00000098049.1
      Conserved Domains (1) summary
      pfam01166
      Location:665 → 721
      TSC22; TSC-22/dip/bun family

    RNA

    1. XR_804450.4 RNA Sequence

    2. XR_804448.4 RNA Sequence

    3. XR_009494393.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials