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    LGI2 leucine rich repeat LGI family member 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 541046, updated on 4-Oct-2024

    Summary

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    Official Symbol
    LGI2provided by VGNC
    Official Full Name
    leucine rich repeat LGI family member 2provided by VGNC
    Primary source
    VGNC:VGNC:30857
    See related
    BGD:BT23956; Ensembl:ENSBTAG00000017390
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See LGI2 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (44589538..44617975, complement)

    Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 149 Neighboring gene uncharacterized LOC112447152 Neighboring gene uncharacterized LOC112447056 Neighboring gene Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase Neighboring gene phosphatidylinositol 4-kinase type 2 beta

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in inhibitory synapse assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat LGI family member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192816.1 → NP_001179745.1  leucine-rich repeat LGI family member 2 precursor

      See identical proteins and their annotated locations for NP_001179745.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000006
      UniProtKB/TrEMBL
      A0AAA9T5G8, F1MZT1
      Related
      ENSBTAP00000023124.3, ENSBTAT00000023124.5
      Conserved Domains (4) summary
      TIGR00864
      Location:140 → 215
      PCC; polycystin cation channel protein
      sd00031
      Location:111 → 134
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:219 → 260
      EPTP; EPTP domain
      pfam13855
      Location:110 → 169
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      44589538..44617975 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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