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    CNTFR ciliary neurotrophic factor receptor [ Bos taurus (domestic cattle) ]

    Gene ID: 539548, updated on 4-Oct-2024

    Summary

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    Official Symbol
    CNTFRprovided by VGNC
    Official Full Name
    ciliary neurotrophic factor receptorprovided by VGNC
    Primary source
    VGNC:VGNC:27535
    See related
    BGD:BT28359; Ensembl:ENSBTAG00000015361
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CNTFR in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (75920612..75958561, complement)

    Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene dynein axonemal intermediate chain 1 Neighboring gene 60S ribosomal protein L5 pseudogene Neighboring gene energy homeostasis associated Neighboring gene ribonuclease P/MRP subunit p25 like Neighboring gene transfer RNA tyrosine (anticodon AUA) Neighboring gene dynactin subunit 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A molecular marker for the bovine ciliary neurotrophic factor receptor gene (CNTFR) maps to 8q21. Wigger G, et al. Anim Genet, 1998 Feb. PMID 9682455
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ciliary neurotrophic factor receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cytokine binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokine-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CNTFR-CLCF1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ciliary neurotrophic factor receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ciliary neurotrophic factor receptor subunit alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001278571.1 → NP_001265500.1  ciliary neurotrophic factor receptor subunit alpha precursor

      See identical proteins and their annotated locations for NP_001265500.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000008
      UniProtKB/TrEMBL
      A0A3Q1LQY1
      Conserved Domains (2) summary
      smart00408
      Location:39 → 96
      IGc2; Immunoglobulin C-2 Type
      cd00063
      Location:204 → 300
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      75920612..75958561 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015472624.3 → XP_015328110.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LQY1
      Conserved Domains (2) summary
      smart00408
      Location:39 → 96
      IGc2; Immunoglobulin C-2 Type
      cd00063
      Location:204 → 300
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    2. XM_024995894.2 → XP_024851662.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LQY1
      Conserved Domains (2) summary
      smart00408
      Location:39 → 96
      IGc2; Immunoglobulin C-2 Type
      cd00063
      Location:204 → 300
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    3. XM_024995893.2 → XP_024851661.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LQY1
      Related
      ENSBTAP00000057428.2, ENSBTAT00000078177.2
      Conserved Domains (2) summary
      smart00408
      Location:39 → 96
      IGc2; Immunoglobulin C-2 Type
      cd00063
      Location:204 → 300
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    4. XM_059889192.1 → XP_059745175.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LQY1

    5. XM_059889193.1 → XP_059745176.1  ciliary neurotrophic factor receptor subunit alpha isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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