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    HTATIP2 HIV-1 Tat interactive protein 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 539276, updated on 4-Oct-2024

    Summary

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    Official Symbol
    HTATIP2provided by VGNC
    Official Full Name
    HIV-1 Tat interactive protein 2provided by VGNC
    Primary source
    VGNC:VGNC:29989
    See related
    Ensembl:ENSBTAG00000013419
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See HTATIP2 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (24565832..24580239, complement)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 6 member 5 Neighboring gene protein arginine methyltransferase 3 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene E3 ubiquitin-protein ligase RNF113A Neighboring gene ubiquitin-conjugating enzyme E2 variant 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC129016

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oxidoreductase HTATIP2
    Names
    HIV-1 Tat interactive protein 2, 30kDa
    NP_001035653.1
    XP_005226816.3
    XP_010819181.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040563.1 → NP_001035653.1  oxidoreductase HTATIP2

      See identical proteins and their annotated locations for NP_001035653.1

      Status: PROVISIONAL

      Source sequence(s)
      BC104577
      UniProtKB/TrEMBL
      A0AAF6DLP7, F1MAU7, Q3SX02
      Related
      ENSBTAP00000017856.4, ENSBTAT00000017856.5
      Conserved Domains (1) summary
      cd05250
      Location:19 → 231
      CC3_like_SDR_a; CC3(TIP30)-like, atypical (a) SDRs

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      24565832..24580239 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005226759.4 → XP_005226816.3  oxidoreductase HTATIP2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9SZM8
      Related
      ENSBTAP00000090878.1, ENSBTAT00000097780.1
      Conserved Domains (1) summary
      cd05250
      Location:59 → 271
      CC3_like_SDR_a; CC3(TIP30)-like, atypical (a) SDRs

    2. XM_010820879.2 → XP_010819181.1  oxidoreductase HTATIP2 isoform X2

      UniProtKB/TrEMBL
      A0AAF6DLP7
      Conserved Domains (2) summary
      cd05250
      Location:22 → 234
      CC3_like_SDR_a; CC3(TIP30)-like, atypical (a) SDRs
      COG0702
      Location:24 → 196
      YbjT; Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains [General function prediction only]
    Nucleotide Protein Strain
    Heading Accession and Version

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