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    CALN1 calneuron 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 538163, updated on 10-Oct-2024

    Summary

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    Official Symbol
    CALN1provided by VGNC
    Official Full Name
    calneuron 1provided by VGNC
    Primary source
    VGNC:VGNC:26714
    See related
    BGD:BT20256; Ensembl:ENSBTAG00000043969
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CALN1 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (28636197..29098356)

    Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene SBDS ribosome maturation factor Neighboring gene tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) Neighboring gene polypeptide N-acetylgalactosaminyltransferase 17 Neighboring gene microRNA mir-2386 Neighboring gene uncharacterized LOC112444308 Neighboring gene activator of transcription and developmental regulator AUTS2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-binding protein 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206115.1 → NP_001193044.1  calcium-binding protein 8

      See identical proteins and their annotated locations for NP_001193044.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000025
      UniProtKB/TrEMBL
      A0AAA9TM69
      Related
      ENSBTAP00000098342.1, ENSBTAT00000118565.1
      Conserved Domains (2) summary
      cd00051
      Location:82 → 143
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:83 → 143
      EF-hand_7; EF-hand domain pair

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      28636197..29098356
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005224934.5 → XP_005224991.1  calcium-binding protein 8 isoform X1

      See identical proteins and their annotated locations for XP_005224991.1

      UniProtKB/TrEMBL
      A0AAA9TM69
      Conserved Domains (1) summary
      PTZ00184
      Location:32 → 142
      PTZ00184; calmodulin; Provisional

    2. XM_059881397.1 → XP_059737380.1  calcium-binding protein 8 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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