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    GRIK5 glutamate ionotropic receptor kainate type subunit 5 [ Bos taurus (domestic cattle) ]

    Gene ID: 537698, updated on 4-Oct-2024

    Summary

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    Official Symbol
    GRIK5provided by VGNC
    Official Full Name
    glutamate ionotropic receptor kainate type subunit 5provided by VGNC
    Primary source
    VGNC:VGNC:57048
    See related
    Ensembl:ENSBTAG00000011723
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See GRIK5 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (51182472..51245915)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene POU class 2 homeobox 2 Neighboring gene zinc finger protein 574 Neighboring gene ATPase Na+/K+ transporting subunit alpha 3 Neighboring gene Rab acceptor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC128958

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables kainate selective glutamate receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in modulation of chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic transmission, glutamatergic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of kainate selective glutamate receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in presynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutamate receptor ionotropic, kainate 5
    Names
    glutamate receptor, ionotropic, kainate 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046424.1 → NP_001039889.1  glutamate receptor ionotropic, kainate 5

      See identical proteins and their annotated locations for NP_001039889.1

      Status: PROVISIONAL

      Source sequence(s)
      BC105560
      UniProtKB/TrEMBL
      E1BKL6, Q2HJD2
      Conserved Domains (3) summary
      pfam00060
      Location:260 → 530
      Lig_chan; Ligand-gated ion channel
      cl10011
      Location:1 → 114
      Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
      cl21456
      Location:129 → 499
      Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      51182472..51245915
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024978413.2 → XP_024834181.1  glutamate receptor ionotropic, kainate 5 isoform X1

      UniProtKB/TrEMBL
      A0AAA9SUA4, A0AAA9T0B2
      Related
      ENSBTAP00000091132.1, ENSBTAT00000100165.1
      Conserved Domains (2) summary
      cd06394
      Location:25 → 399
      PBP1_iGluR_Kainate_KA1_2; N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor
      cl21456
      Location:414 → 785
      Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

    2. XM_024978414.2 → XP_024834182.1  glutamate receptor ionotropic, kainate 5 isoform X2

      UniProtKB/TrEMBL
      A0AAA9SUA4
      Related
      ENSBTAP00000088915.1, ENSBTAT00000114000.1
      Conserved Domains (2) summary
      cd06394
      Location:23 → 401
      PBP1_iGluR_Kainate_KA1_2; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor
      cl21456
      Location:414 → 784
      Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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