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    CPEB3 cytoplasmic polyadenylation element binding protein 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 537016, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CPEB3provided by VGNC
    Official Full Name
    cytoplasmic polyadenylation element binding protein 3provided by VGNC
    Primary source
    VGNC:VGNC:27649
    See related
    Ensembl:ENSBTAG00000015450
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CPEB3 in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 26 NC_037353.1 (13515355..13778677, complement)

    Chromosome 26 - NC_037353.1Genomic Context describing neighboring genes Neighboring gene tankyrase 2 Neighboring gene small nucleolar RNA SNORA79 Neighboring gene fibroblast growth factor binding protein 3 Neighboring gene B-TFIID TATA-box binding protein associated factor 1 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene membrane associated ring-CH-type finger 5 Neighboring gene uncharacterized LOC132343928

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037353.1 Chromosome 26 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CPEB3 regulates the proliferation and apoptosis of bovine cumulus cells. Wang Y, et al. Anim Sci J, 2020 Jan-Dec. PMID 32648330
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CPEB3 regulates the proliferation and apoptosis of bovine cumulus cells.
      Title: CPEB3 regulates the proliferation and apoptosis of bovine cumulus cells.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA regulatory element binding translation repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation factor activity, RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytoplasmic polyadenylation element-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193228.2 → NP_001180157.2  cytoplasmic polyadenylation element-binding protein 3

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000026
      UniProtKB/TrEMBL
      A0A3Q1LL99, A0AAA9SVW4
      Related
      ENSBTAP00000090627.1, ENSBTAT00000099493.1
      Conserved Domains (3) summary
      cd12724
      Location:440 → 531
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:548 → 628
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:623 → 684
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037353.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      13515355..13778677 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059881919.1 → XP_059737902.1  cytoplasmic polyadenylation element-binding protein 3 isoform X6

      UniProtKB/TrEMBL
      A0A3Q1MDU5

    2. XM_024985731.2 → XP_024841499.1  cytoplasmic polyadenylation element-binding protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A3Q1LL99
      Conserved Domains (3) summary
      cd12724
      Location:457 → 548
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:565 → 645
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:640 → 701
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    3. XM_024985732.2 → XP_024841500.1  cytoplasmic polyadenylation element-binding protein 3 isoform X7

      UniProtKB/TrEMBL
      A0A3Q1LL99, E1BGL3
      Related
      ENSBTAP00000013178.7, ENSBTAT00000013178.7
      Conserved Domains (3) summary
      cd12724
      Location:426 → 517
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:534 → 614
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:609 → 670
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    4. XM_005225419.5 → XP_005225476.2  cytoplasmic polyadenylation element-binding protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A3Q1LL99
      Conserved Domains (3) summary
      cd12724
      Location:457 → 548
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:565 → 645
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:640 → 701
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    5. XM_005225420.5 → XP_005225477.2  cytoplasmic polyadenylation element-binding protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A3Q1LL99
      Conserved Domains (3) summary
      cd12724
      Location:457 → 548
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:565 → 645
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:640 → 701
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    6. XM_010819779.4 → XP_010818081.2  cytoplasmic polyadenylation element-binding protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1MDU5, A0AAA9T4F8
      Related
      ENSBTAP00000092691.1, ENSBTAT00000091861.1
      Conserved Domains (3) summary
      cd12724
      Location:476 → 567
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:584 → 664
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:659 → 720
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    7. XM_010819778.4 → XP_010818080.2  cytoplasmic polyadenylation element-binding protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MDU5
      Conserved Domains (3) summary
      cd12724
      Location:484 → 575
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:592 → 672
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:667 → 728
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    8. XM_010819777.4 → XP_010818079.2  cytoplasmic polyadenylation element-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MDU5
      Conserved Domains (3) summary
      cd12724
      Location:499 → 590
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:607 → 687
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:682 → 743
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    9. XM_015460600.3 → XP_015316086.2  cytoplasmic polyadenylation element-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MDU5
      Conserved Domains (3) summary
      cd12724
      Location:507 → 598
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:615 → 695
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:690 → 751
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    Nucleotide Protein Strain
    Heading Accession and Version

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