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    ATP10D ATPase phospholipid transporting 10D (putative) [ Bos taurus (domestic cattle) ]

    Gene ID: 536495, updated on 4-Oct-2024

    Summary

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    Official Symbol
    ATP10Dprovided by VGNC
    Official Full Name
    ATPase phospholipid transporting 10D (putative)provided by VGNC
    Primary source
    VGNC:VGNC:55156
    See related
    BGD:BT16973; Ensembl:ENSBTAG00000000473
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human all
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    Genomic context

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    See ATP10D in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (66135915..66272136)

    Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid type A receptor subunit beta1 Neighboring gene U6 spliceosomal RNA Neighboring gene COMM domain containing 8 Neighboring gene uncharacterized LOC132345514 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene tropomyosin alpha-3 chain-like Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene corin, serine peptidase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC160068

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase-coupled intramembrane lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipid-transporting ATPase VD
    Names
    ATPase, class V, type 10D
    NP_001099098.1
    XP_024849102.1
    XP_024849103.1
    XP_024849104.1
    XP_024849105.1
    XP_024849106.1
    XP_024849107.1
    XP_024849108.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105628.2 → NP_001099098.1  phospholipid-transporting ATPase VD

      See identical proteins and their annotated locations for NP_001099098.1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000006
      UniProtKB/TrEMBL
      A7Z029
      Related
      ENSBTAP00000065584.2, ENSBTAT00000077470.2
      Conserved Domains (6) summary
      TIGR01652
      Location:71 → 1326
      ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
      pfam00122
      Location:128 → 216
      E1-E2_ATPase; E1-E2 ATPase
      pfam13246
      Location:726 → 806
      Cation_ATPase; Cation transport ATPase (P-type)
      pfam16209
      Location:71 → 122
      PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
      pfam16212
      Location:1081 → 1326
      PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
      cl21460
      Location:1050 → 1081
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      66135915..66272136
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024993336.2 → XP_024849104.1  phospholipid-transporting ATPase VD isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MCF3
      Related
      ENSBTAP00000066449.2, ENSBTAT00000082277.2
      Conserved Domains (1) summary
      cd02073
      Location:83 → 1223
      P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

    2. XM_024993335.2 → XP_024849103.1  phospholipid-transporting ATPase VD isoform X2

      Conserved Domains (1) summary
      cd02073
      Location:83 → 1185
      P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

    3. XM_024993338.2 → XP_024849106.1  phospholipid-transporting ATPase VD isoform X5

      Conserved Domains (1) summary
      cd02073
      Location:83 → 1096
      P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

    4. XM_024993337.2 → XP_024849105.1  phospholipid-transporting ATPase VD isoform X4

      UniProtKB/TrEMBL
      A0A3Q1M6A4
      Related
      ENSBTAP00000065902.1, ENSBTAT00000076489.2
      Conserved Domains (1) summary
      cd02073
      Location:83 → 1158
      P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

    5. XM_024993334.2 → XP_024849102.1  phospholipid-transporting ATPase VD isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M6H4
      Conserved Domains (1) summary
      cd02073
      Location:83 → 1223
      P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

    6. XM_024993339.2 → XP_024849107.1  phospholipid-transporting ATPase VD isoform X6

      Conserved Domains (1) summary
      cd02073
      Location:1 → 1090
      P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

    7. XM_024993340.2 → XP_024849108.1  phospholipid-transporting ATPase VD isoform X7

      Conserved Domains (1) summary
      cd02073
      Location:1 → 1021
      P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C
    Nucleotide Protein Strain
    Heading Accession and Version

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