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    GALNT3 polypeptide N-acetylgalactosaminyltransferase 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 535458, updated on 4-Oct-2024

    Summary

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    Official Symbol
    GALNT3provided by VGNC
    Official Full Name
    polypeptide N-acetylgalactosaminyltransferase 3provided by VGNC
    Primary source
    VGNC:VGNC:29232
    See related
    BGD:BT13612; Ensembl:ENSBTAG00000013957
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See GALNT3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (30517055..30570302)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132342960 Neighboring gene tetratricopeptide repeat domain 21B Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene uncharacterized LOC132342961 Neighboring gene cysteine and serine rich nuclear protein 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polypeptide N-acetylgalactosaminyltransferase 3
    Names
    UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)
    NP_001179787.3
    XP_005202512.2
    XP_010800298.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192858.3 → NP_001179787.3  polypeptide N-acetylgalactosaminyltransferase 3

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000002
      UniProtKB/TrEMBL
      A0AAA9S5W3, E1BBP1
      Related
      ENSBTAP00000018541.7, ENSBTAT00000018541.7
      Conserved Domains (2) summary
      cd02510
      Location:188 → 493
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:506 → 627
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      30517055..30570302
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005202455.5 → XP_005202512.2  polypeptide N-acetylgalactosaminyltransferase 3 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S5W3, E1BBP1
      Conserved Domains (2) summary
      cd02510
      Location:188 → 493
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:506 → 627
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    2. XM_010801996.4 → XP_010800298.2  polypeptide N-acetylgalactosaminyltransferase 3 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S5W3, E1BBP1
      Related
      ENSBTAP00000080608.1, ENSBTAT00000127093.1
      Conserved Domains (2) summary
      cd02510
      Location:188 → 493
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:506 → 627
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    Nucleotide Protein Strain
    Heading Accession and Version

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