U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    TAP1 transporter 1, ATP binding cassette subfamily B member [ Bos taurus (domestic cattle) ]

    Gene ID: 524959, updated on 4-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TAP1provided by VGNC
    Official Full Name
    transporter 1, ATP binding cassette subfamily B memberprovided by VGNC
    Primary source
    VGNC:VGNC:35598
    See related
    Ensembl:ENSBTAG00000008953
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TAP1 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (7177596..7186308, complement)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132343596 Neighboring gene proteasome 20S subunit beta 8 Neighboring gene proteasome 20S subunit beta 9 Neighboring gene histone H2B-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type oligopeptide transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptide transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    antigen peptide transporter 1
    Names
    transporter 1 ATP-binding cassette sub-family B
    NP_001091527.1
    XP_005223309.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098058.1 → NP_001091527.1  antigen peptide transporter 1

      See identical proteins and their annotated locations for NP_001091527.1

      Status: PROVISIONAL

      Source sequence(s)
      AY957499
      UniProtKB/TrEMBL
      A0AAA9TUU7, Q32S31
      Conserved Domains (3) summary
      TIGR00958
      Location:37 → 739
      3a01208; Conjugate Transporter-2 (CT2) Family protein
      pfam00664
      Location:191 → 457
      ABC_membrane; ABC transporter transmembrane region
      cl21455
      Location:491 → 719
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      7177596..7186308 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005223252.4 → XP_005223309.1  antigen peptide transporter 1 isoform X1

      See identical proteins and their annotated locations for XP_005223309.1

      UniProtKB/TrEMBL
      A6QPZ6, F1MVY8
      Related
      ENSBTAP00000045934.2, ENSBTAT00000048986.4
      Conserved Domains (3) summary
      TIGR00958
      Location:37 → 740
      3a01208; Conjugate Transporter-2 (CT2) Family protein
      pfam00664
      Location:191 → 458
      ABC_membrane; ABC transporter transmembrane region
      cl21455
      Location:492 → 720
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials