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    CHMP2A charged multivesicular body protein 2A [ Bos taurus (domestic cattle) ]

    Gene ID: 523847, updated on 4-Oct-2024

    Summary

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    Official Symbol
    CHMP2Aprovided by VGNC
    Official Full Name
    charged multivesicular body protein 2Aprovided by VGNC
    Primary source
    VGNC:VGNC:27300
    See related
    BGD:BT12231; Ensembl:ENSBTAG00000013882
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CHMP2A in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (65775981..65778680, complement)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 45 Neighboring gene tripartite motif containing 28 Neighboring gene ubiquitin conjugating enzyme E2 M Neighboring gene myeloid zinc finger 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC127087

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endosome transport via multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in late endosome to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT III complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in multivesicular body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    charged multivesicular body protein 2a
    Names
    chromatin modifying protein 2A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034550.2 → NP_001029722.1  charged multivesicular body protein 2a

      See identical proteins and their annotated locations for NP_001029722.1

      Status: PROVISIONAL

      Source sequence(s)
      BC102258
      UniProtKB/TrEMBL
      Q3T0U5
      Related
      ENSBTAP00000018429.2, ENSBTAT00000018429.3
      Conserved Domains (1) summary
      pfam03357
      Location:17 → 185
      Snf7; Snf7

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      65775981..65778680 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005219786.2 → XP_005219843.1  charged multivesicular body protein 2a isoform X1

      See identical proteins and their annotated locations for XP_005219843.1

      UniProtKB/TrEMBL
      Q3T0U5
      Conserved Domains (1) summary
      pfam03357
      Location:17 → 185
      Snf7; Snf7
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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