U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    RDH16 retinol dehydrogenase 16 (all-trans) [ Bos taurus (domestic cattle) ]

    Gene ID: 519940, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    RDH16
    Gene description
    retinol dehydrogenase 16 (all-trans)
    See related
    BGD:BT12726; Ensembl:ENSBTAG00000001392
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RDH16 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (56530339..56538401)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene retinol dehydrogenase 16-like Neighboring gene retinol dehydrogenase 16-like Neighboring gene short chain dehydrogenase/reductase family 9C member 7 Neighboring gene elongin-C-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Polymorphisms of RDH16 and VEGFR1 influence M. trapezius steatosis in Japanese Black carcass. Ishida T, et al. Anim Sci J, 2017 Aug. PMID 27878895
    2. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    3. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    4. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Polymorphisms of RDH16 and VEGFR1 influence M. trapezius steatosis in Japanese Black cattle.
      Title: Polymorphisms of RDH16 and VEGFR1 influence M. trapezius steatosis in Japanese Black carcass.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    retinol dehydrogenase 16
    Names
    microsomal NAD+-dependent retinol dehydrogenase 4
    NP_001069264.1
    XP_010803478.3
    XP_024847532.1
    XP_059742404.1
    XP_059742405.1
    XP_059742407.1
    XP_059742408.1
    XP_059742409.1
    XP_059742410.1
    XP_059742411.1
    XP_059742412.1
    XP_059742413.1
    XP_059742414.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075796.1 → NP_001069264.1  retinol dehydrogenase 16

      See identical proteins and their annotated locations for NP_001069264.1

      Status: PROVISIONAL

      Source sequence(s)
      BT026289
      UniProtKB/TrEMBL
      A0A3Q1N166, Q0V8D0
      Conserved Domains (1) summary
      cl25409
      Location:30 → 303
      SDR; Short-chain dehydrogenases/reductases (SDR)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      56530339..56538401
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059886426.1 → XP_059742409.1  retinol dehydrogenase 16 isoform X4

    2. XM_059886428.1 → XP_059742411.1  retinol dehydrogenase 16 isoform X4

    3. XM_059886430.1 → XP_059742413.1  retinol dehydrogenase 16 isoform X4

    4. XM_059886422.1 → XP_059742405.1  retinol dehydrogenase 16 isoform X2

    5. XM_024991764.2 → XP_024847532.1  retinol dehydrogenase 16 isoform X5

      UniProtKB/TrEMBL
      A0A3Q1N166, F6R103
      Related
      ENSBTAP00000001829.4, ENSBTAT00000001829.5
      Conserved Domains (1) summary
      cl25409
      Location:41 → 308
      SDR; Short-chain dehydrogenases/reductases (SDR)

    6. XM_059886421.1 → XP_059742404.1  retinol dehydrogenase 16 isoform X1

    7. XM_010805176.4 → XP_010803478.3  retinol dehydrogenase 16 isoform X3

      Related
      ENSBTAP00000062682.2, ENSBTAT00000078851.2

    8. XM_059886431.1 → XP_059742414.1  retinol dehydrogenase 16 isoform X6

      UniProtKB/TrEMBL
      Q0V8D0

    9. XM_059886425.1 → XP_059742408.1  retinol dehydrogenase 16 isoform X4

    10. XM_059886427.1 → XP_059742410.1  retinol dehydrogenase 16 isoform X4

    11. XM_059886424.1 → XP_059742407.1  retinol dehydrogenase 16 isoform X4

    12. XM_059886429.1 → XP_059742412.1  retinol dehydrogenase 16 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.