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    CFAP43 cilia and flagella associated protein 43 [ Bos taurus (domestic cattle) ]

    Gene ID: 518801, updated on 4-Oct-2024

    Summary

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    Official Symbol
    CFAP43provided by VGNC
    Official Full Name
    cilia and flagella associated protein 43provided by VGNC
    Primary source
    VGNC:VGNC:27243
    See related
    BGD:BT28718; Ensembl:ENSBTAG00000014574
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    WDR96
    Orthologs
    human mouse all
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    Genomic context

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    See CFAP43 in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 26 NC_037353.1 (24694991..24795325, complement)

    Chromosome 26 - NC_037353.1Genomic Context describing neighboring genes Neighboring gene collagen type XVII alpha 1 chain Neighboring gene SWI5 dependent homologous recombination repair protein 1 Neighboring gene uncharacterized LOC112444463 Neighboring gene glutathione S-transferase omega-1 Neighboring gene glutathione S-transferase omega 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037353.1 Chromosome 26 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sperm axoneme assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axoneme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cilia- and flagella-associated protein 43
    Names
    WD repeat domain 96

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205849.3 → NP_001192778.3  cilia- and flagella-associated protein 43

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000026
      Conserved Domains (4) summary
      COG2319
      Location:316 → 504
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:352 → 387
      7WD40; WD40 repeat [structural motif]
      pfam03528
      Location:1023 → 1298
      Rabaptin
      cl25732
      Location:689 → 1057
      SMC_N; RecF/RecN/SMC N terminal domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037353.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      24694991..24795325 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015460666.3 → XP_015316152.2  cilia- and flagella-associated protein 43 isoform X3

      Conserved Domains (4) summary
      COG2319
      Location:316 → 504
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:352 → 387
      7WD40; WD40 repeat [structural motif]
      pfam03528
      Location:976 → 1251
      Rabaptin
      cl25732
      Location:639 → 1010
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_059881860.1 → XP_059737843.1  cilia- and flagella-associated protein 43 isoform X4

    3. XM_010819895.4 → XP_010818197.2  cilia- and flagella-associated protein 43 isoform X2

      Conserved Domains (3) summary
      COG2319
      Location:316 → 504
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:352 → 387
      7WD40; WD40 repeat [structural motif]
      cl25732
      Location:722 → 1256
      SMC_N; RecF/RecN/SMC N terminal domain

    4. XM_010819894.4 → XP_010818196.2  cilia- and flagella-associated protein 43 isoform X1

      UniProtKB/TrEMBL
      E1BMD1
      Related
      ENSBTAP00000019397.7, ENSBTAT00000019397.7
      Conserved Domains (4) summary
      COG2319
      Location:316 → 504
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:352 → 387
      7WD40; WD40 repeat [structural motif]
      pfam03528
      Location:1026 → 1301
      Rabaptin
      cl25732
      Location:689 → 1060
      SMC_N; RecF/RecN/SMC N terminal domain

    5. XM_059881861.1 → XP_059737844.1  cilia- and flagella-associated protein 43 isoform X5

    6. XM_024985629.2 → XP_024841397.1  cilia- and flagella-associated protein 43 isoform X7

      Conserved Domains (4) summary
      COG2319
      Location:8 → 196
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:44 → 79
      7WD40; WD40 repeat [structural motif]
      pfam03528
      Location:718 → 993
      Rabaptin
      cl25732
      Location:381 → 752
      SMC_N; RecF/RecN/SMC N terminal domain

    7. XM_059881862.1 → XP_059737845.1  cilia- and flagella-associated protein 43 isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version

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