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    SEMA6D semaphorin 6D [ Bos taurus (domestic cattle) ]

    Gene ID: 518458, updated on 10-Oct-2024

    Summary

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    Official Symbol
    SEMA6Dprovided by VGNC
    Official Full Name
    semaphorin 6Dprovided by VGNC
    Primary source
    VGNC:VGNC:34444
    See related
    BGD:BT23567; Ensembl:ENSBTAG00000016800
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SEMA6D in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 10 NC_037337.1 (62638620..62697188, complement)

    Chromosome 10 - NC_037337.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112448493 Neighboring gene uncharacterized LOC101902090 Neighboring gene transfer RNA histidin (anticodon AUG) Neighboring gene uncharacterized LOC112448561 Neighboring gene voltage-dependent anion-selective channel protein 3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037337.1 Chromosome 10 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-6D
    Names
    sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191133.1 → NP_001178062.1  semaphorin-6D precursor

      See identical proteins and their annotated locations for NP_001178062.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000010
      UniProtKB/TrEMBL
      A0A3Q1MMS5, E1BNY3
      Related
      ENSBTAP00000022349.5, ENSBTAT00000022349.6
      Conserved Domains (3) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 569
      PSI; Plexin repeat
      cl26464
      Location:911 → 1056
      Atrophin-1; Atrophin-1 family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037337.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      62638620..62697188 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059890400.1 → XP_059746383.1  semaphorin-6D isoform X4

    2. XM_059890399.1 → XP_059746382.1  semaphorin-6D isoform X3

      UniProtKB/TrEMBL
      E1BNY3

    3. XM_059890397.1 → XP_059746380.1  semaphorin-6D isoform X1

    4. XM_059890407.1 → XP_059746390.1  semaphorin-6D isoform X11

    5. XM_059890403.1 → XP_059746386.1  semaphorin-6D isoform X7

    6. XM_059890405.1 → XP_059746388.1  semaphorin-6D isoform X9

      UniProtKB/TrEMBL
      A0A3Q1MLI3
      Related
      ENSBTAP00000070146.1, ENSBTAT00000076742.2

    7. XM_010809338.4 → XP_010807640.1  semaphorin-6D isoform X1

      See identical proteins and their annotated locations for XP_010807640.1

      UniProtKB/TrEMBL
      A0A3Q1MMS5
      Conserved Domains (3) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 582
      PSI; Plexin repeat
      cl26464
      Location:924 → 1069
      Atrophin-1; Atrophin-1 family

    8. XM_024997535.2 → XP_024853303.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MMS5
      Conserved Domains (3) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 582
      PSI; Plexin repeat
      cl26464
      Location:924 → 1069
      Atrophin-1; Atrophin-1 family

    9. XM_024997534.2 → XP_024853302.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MMS5
      Conserved Domains (3) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 582
      PSI; Plexin repeat
      cl26464
      Location:924 → 1069
      Atrophin-1; Atrophin-1 family

    10. XM_059890398.1 → XP_059746381.1  semaphorin-6D isoform X2

    11. XM_024997536.2 → XP_024853304.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MMS5
      Conserved Domains (3) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 582
      PSI; Plexin repeat
      cl26464
      Location:924 → 1069
      Atrophin-1; Atrophin-1 family

    12. XM_059890401.1 → XP_059746384.1  semaphorin-6D isoform X5

    13. XM_059890404.1 → XP_059746387.1  semaphorin-6D isoform X8

    14. XM_059890406.1 → XP_059746389.1  semaphorin-6D isoform X10

      UniProtKB/TrEMBL
      A0A3Q1MDS6
      Related
      ENSBTAP00000072290.2, ENSBTAT00000083251.2

    15. XM_059890402.1 → XP_059746385.1  semaphorin-6D isoform X6

      UniProtKB/TrEMBL
      A0A3Q1M5K3
      Related
      ENSBTAP00000065582.1, ENSBTAT00000085838.2
    Nucleotide Protein Strain
    Heading Accession and Version

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