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    SMIM19 small integral membrane protein 19 [ Bos taurus (domestic cattle) ]

    Gene ID: 515895, updated on 12-Oct-2024

    Summary

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    Official Symbol
    SMIM19provided by VGNC
    Official Full Name
    small integral membrane protein 19provided by VGNC
    Primary source
    VGNC:VGNC:35018
    See related
    BGD:BT18013; Ensembl:ENSBTAG00000000979
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C8orf40; C27H8orf40
    Orthologs
    human mouse all
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    Genomic context

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    See SMIM19 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 27 NC_037354.1 (37369026..37383613)

    Chromosome 27 - NC_037354.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101906779 Neighboring gene solute carrier family 20 member 2 Neighboring gene large ribosomal subunit protein uL11-like Neighboring gene U6 spliceosomal RNA Neighboring gene cholinergic receptor nicotinic beta 3 subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037354.1 Chromosome 27 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    small integral membrane protein 19
    Names
    UPF0697 protein C8orf40 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098040.2 → NP_001091509.2  small integral membrane protein 19

      See identical proteins and their annotated locations for NP_001091509.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      BC140495, DV927834
      UniProtKB/Swiss-Prot
      A5D7B5
      Related
      ENSBTAP00000054458.3, ENSBTAT00000064873.3
      Conserved Domains (1) summary
      pfam15117
      Location:10 → 107
      UPF0697; Uncharacterized protein family UPF0697

    2. NM_001146118.1 → NP_001139590.1  small integral membrane protein 19

      See identical proteins and their annotated locations for NP_001139590.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      BC140495, EE349132, EE386282
      UniProtKB/Swiss-Prot
      A5D7B5
      Conserved Domains (1) summary
      pfam15117
      Location:10 → 107
      UPF0697; Uncharacterized protein family UPF0697

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037354.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      37369026..37383613
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059882223.1 → XP_059738206.1  small integral membrane protein 19 isoform X1

      UniProtKB/Swiss-Prot
      A5D7B5
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A5D7B5.2 GenPept UniProtKB/Swiss-Prot:A5D7B5

    Gene LinkOut

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