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    EMG1 EMG1 N1-specific pseudouridine methyltransferase [ Bos taurus (domestic cattle) ]

    Gene ID: 515362, updated on 4-Oct-2024

    Summary

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    Official Symbol
    EMG1provided by VGNC
    Official Full Name
    EMG1 N1-specific pseudouridine methyltransferaseprovided by VGNC
    Primary source
    VGNC:VGNC:58013
    See related
    BGD:BT15168
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See EMG1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (103487265..103492960, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112446757 Neighboring gene complement C1r Neighboring gene complement C1s Neighboring gene lysophosphatidylcholine acyltransferase 3 Neighboring gene small nucleolar RNA U89 Neighboring gene uncharacterized LOC112446758 Neighboring gene prohibitin 2 Neighboring gene microRNA mir-141

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC138092

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables rRNA (pseudouridine) methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA base methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosomal RNA small subunit methyltransferase NEP1
    Names
    EMG1 nucleolar protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046197.2 → NP_001039662.2  ribosomal RNA small subunit methyltransferase NEP1

      See identical proteins and their annotated locations for NP_001039662.2

      Status: VALIDATED

      Source sequence(s)
      DV843519, EV745816
      UniProtKB/TrEMBL
      F1N532
      Conserved Domains (1) summary
      pfam03587
      Location:45 → 238
      EMG1; EMG1/NEP1 methyltransferase

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      103487265..103492960 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005207149.5 → XP_005207206.2  ribosomal RNA small subunit methyltransferase NEP1 isoform X1

      Conserved Domains (1) summary
      pfam03587
      Location:45 → 207
      EMG1; EMG1/NEP1 methyltransferase
    Nucleotide Protein Strain
    Heading Accession and Version

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