U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LHX9 LIM homeobox 9 [ Bos taurus (domestic cattle) ]

    Gene ID: 515012, updated on 4-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LHX9provided by VGNC
    Official Full Name
    LIM homeobox 9provided by VGNC
    Primary source
    VGNC:VGNC:30878
    See related
    Ensembl:ENSBTAG00000013499
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LHX9 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (76858125..76878930)

    Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112441872 Neighboring gene DENN domain containing 1B Neighboring gene chromosome 16 C1orf53 homolog Neighboring gene uncharacterized LOC112441798 Neighboring gene NIMA related kinase 7

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LIM/homeobox protein Lhx9
    Names
    LIM homeobox protein 9

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024544.1 → NP_001019715.1  LIM/homeobox protein Lhx9

      See identical proteins and their annotated locations for NP_001019715.1

      Status: PROVISIONAL

      Source sequence(s)
      BT021834
      UniProtKB/TrEMBL
      F1N6S3, Q58CW3
      Conserved Domains (3) summary
      cd09377
      Location:110 → 168
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:42 → 105
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:252 → 304
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      76858125..76878930
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015475271.3 → XP_015330757.1  LIM/homeobox protein Lhx9 isoform X2

      UniProtKB/Swiss-Prot
      A0JNI8
      Conserved Domains (3) summary
      cd09377
      Location:120 → 178
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:52 → 115
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:262 → 314
      Homeobox; Homeobox domain

    2. XM_024976206.2 → XP_024831974.1  LIM/homeobox protein Lhx9 isoform X5

      UniProtKB/TrEMBL
      A0A452DJH3
      Related
      ENSBTAP00000050628.4, ENSBTAT00000054943.4
      Conserved Domains (3) summary
      cd09377
      Location:120 → 178
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:52 → 115
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:262 → 303
      Homeobox; Homeobox domain

    3. XM_010813552.4 → XP_010811854.1  LIM/homeobox protein Lhx9 isoform X1

      See identical proteins and their annotated locations for XP_010811854.1

      UniProtKB/Swiss-Prot
      A0JNI8, Q0V893
      Related
      ENSBTAP00000041150.5, ENSBTAT00000043591.5
      Conserved Domains (3) summary
      cd09377
      Location:129 → 187
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:61 → 124
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:271 → 323
      Homeobox; Homeobox domain

    4. XM_005217352.5 → XP_005217409.1  LIM/homeobox protein Lhx9 isoform X4

      See identical proteins and their annotated locations for XP_005217409.1

      Conserved Domains (3) summary
      cd09377
      Location:129 → 187
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:61 → 124
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:271 → 312
      Homeobox; Homeobox domain

    5. XM_059875374.1 → XP_059731357.1  LIM/homeobox protein Lhx9 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0JNI8.2 GenPept UniProtKB/Swiss-Prot:A0JNI8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials